wikipathways-collection

WikiPathways WP4263

• WikiPathways: WP4263 (classic)
• Species: Homo sapiens
• Scholia: WP4263

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 9
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

http://classic.wikipathways.org/instance/WP4263_r127492 http://rdf.wikipathways.org/Pathway/WP4263_r127492/DataNode/fd214 (TGFb Signaling
Pathway)
http://classic.wikipathways.org/instance/WP4263_r127492 http://rdf.wikipathways.org/Pathway/WP4263_r127492/DataNode/ff2d3 (VEGF Signaling
Pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 9

http://classic.wikipathways.org/instance/WP4263_r127492 "DS DNA break repair" with graphId e29ed
http://classic.wikipathways.org/instance/WP4263_r127492 "Proliferative genes" with graphId bade0
http://classic.wikipathways.org/instance/WP4263_r127492 "DNA damage" with graphId b2570
http://classic.wikipathways.org/instance/WP4263_r127492 "Cytoskeleton organization
Cell motility" with graphId faacd
http://classic.wikipathways.org/instance/WP4263_r127492 "Supressed 
apoptosis" with graphId d9248
http://classic.wikipathways.org/instance/WP4263_r127492 "Anti-apoptotic 
genes" with graphId ab1e8
http://classic.wikipathways.org/instance/WP4263_r127492 "Growth inhibition" with graphId a2700
http://classic.wikipathways.org/instance/WP4263_r127492 "Cell survival" with graphId ca43d
http://classic.wikipathways.org/instance/WP4263_r127492 "Angiogenesis" with graphId e7ca4