wikipathways-collection

WikiPathways WP4249

• WikiPathways: WP4249 (classic)
• Species: Homo sapiens
• Scholia: WP4249

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 4
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 3

http://classic.wikipathways.org/instance/WP4249_r127354 "Degradation" with graphId e9b5b
http://classic.wikipathways.org/instance/WP4249_r127354 "Degradation" with graphId a8d45
http://classic.wikipathways.org/instance/WP4249_r127354 "Degradation" with graphId cd9af

Possible MIM translocation

Interactions between identical nodes: 4

http://classic.wikipathways.org/instance/WP4249_r127354 http://rdf.wikipathways.org/Pathway/WP4249_r127354/WP/Interaction/idb672cb68 "SMO" (https://identifiers.org/ensembl/ENSG00000128602) and 
SMO" (https://identifiers.org/ensembl/ENSG00000128602)
http://classic.wikipathways.org/instance/WP4249_r127354 http://rdf.wikipathways.org/Pathway/WP4249_r127354/WP/Interaction/id6d9bd167 "SMO" (https://identifiers.org/ensembl/ENSG00000128602) and 
SMO" (https://identifiers.org/ensembl/ENSG00000128602)
http://classic.wikipathways.org/instance/WP4249_r127354 http://rdf.wikipathways.org/Pathway/WP4249_r127354/WP/Interaction/fe7da "SMO" (https://identifiers.org/ensembl/ENSG00000128602) and 
SMO" (https://identifiers.org/ensembl/ENSG00000128602)
http://classic.wikipathways.org/instance/WP4249_r127354 http://rdf.wikipathways.org/Pathway/WP4249_r127354/WP/Interaction/idee8796ab "GPR161" (https://identifiers.org/ensembl/ENSG00000143147) and 
GPR161" (https://identifiers.org/ensembl/ENSG00000143147)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations