wikipathways-collection

WikiPathways WP4016

• WikiPathways: WP4016 (classic)
• Species: Homo sapiens
• Scholia: WP4016

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 8
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 19
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 8

http://classic.wikipathways.org/instance/WP4016_r120667 http://rdf.wikipathways.org/Pathway/WP4016_r120667/DataNode/afd0e (BLM)
http://classic.wikipathways.org/instance/WP4016_r120667 http://rdf.wikipathways.org/Pathway/WP4016_r120667/DataNode/d47d7 (BLM)
http://classic.wikipathways.org/instance/WP4016_r120667 http://rdf.wikipathways.org/Pathway/WP4016_r120667/DataNode/f6363 (Cellular response
to DNA damage)
http://classic.wikipathways.org/instance/WP4016_r120667 http://rdf.wikipathways.org/Pathway/WP4016_r120667/DataNode/de15a (DNA Polymerase
delta tetramer)
http://classic.wikipathways.org/instance/WP4016_r120667 http://rdf.wikipathways.org/Pathway/WP4016_r120667/DataNode/bfb0d (Damage processing)
http://classic.wikipathways.org/instance/WP4016_r120667 http://rdf.wikipathways.org/Pathway/WP4016_r120667/DataNode/ebdc5 (G1/S boundary activation)
http://classic.wikipathways.org/instance/WP4016_r120667 http://rdf.wikipathways.org/Pathway/WP4016_r120667/DataNode/ba8e9 (RNF8)
http://classic.wikipathways.org/instance/WP4016_r120667 http://rdf.wikipathways.org/Pathway/WP4016_r120667/DataNode/be3dc (RPA1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 19

http://classic.wikipathways.org/instance/WP4016_r120667 "ssDNA" with graphId c6869
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId df98e
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId d97b7
http://classic.wikipathways.org/instance/WP4016_r120667 "DNA DSBs" with graphId d24cf
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId d151b
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId f7cda
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId ff1bd
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId aa7de
http://classic.wikipathways.org/instance/WP4016_r120667 "RecQ-like helicases" with graphId a7c39
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId fad82
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId f7759
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId c4b97
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId aa9ab
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId d5755
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId b9830
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId e3fb8
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId ca950
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId a04c9
http://classic.wikipathways.org/instance/WP4016_r120667 "" with graphId f1ac0