wikipathways-collection

WikiPathways WP3830

• WikiPathways: WP3830 (classic)
• Species: Drosophila melanogaster

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 6 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 8
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests
  • outdatedHGNCSymbol: .. all OK!
  • outdatedHGNCAccessionNumber: .. all OK!
  • outdatedNCBIIdentifiers: .. all OK!
  • outdatedChEBIIdentifiers: .. all OK!
  • outdatedHMDBIdentifiers: .. all OK!
  • outdatedUniProtKBIdentifiers2: .x we found 1 problem(s):
    • Old UniProtKB identifiers detected: 1
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 16 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP3830_r116931 http://rdf.wikipathways.org/Pathway/WP3830_r116931/DataNode/c05fa (CLIP-SP)
• http://classic.wikipathways.org/instance/WP3830_r116931 http://rdf.wikipathways.org/Pathway/WP3830_r116931/DataNode/a380a (Ikky)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 8

• http://classic.wikipathways.org/instance/WP3830_r116931 “Virus” with graphId b7674
• http://classic.wikipathways.org/instance/WP3830_r116931 “DAP-Type PGN Virus” with graphId bd13e
• http://classic.wikipathways.org/instance/WP3830_r116931 “Yeast” with graphId fc0a1
• http://classic.wikipathways.org/instance/WP3830_r116931 “K-Type PGN” with graphId de26d
• http://classic.wikipathways.org/instance/WP3830_r116931 “Fungi” with graphId ea0d9
• http://classic.wikipathways.org/instance/WP3830_r116931 “Effector Genes” with graphId d5838
• http://classic.wikipathways.org/instance/WP3830_r116931 “Upregulation of Immune Genes” with graphId f275b
• http://classic.wikipathways.org/instance/WP3830_r116931 “Virus” with graphId d5587

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Interactions with unconnected points

Interactions with unconnected points: 1

• http://classic.wikipathways.org/instance/WP3830_r116931

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

UniProtKB identifier has been retracted

Old UniProtKB identifiers detected: 1

• http://classic.wikipathways.org/instance/WP3830_r116931 spz2 has UniProtKB ID Q8IRB0 but has been replaced by B7TB45

More details at https://www.wikipathways.org/WikiPathwaysCurator/Sec2PriProjectTests/outdatedUniProtKBIdentifiers2