wikipathways-collection

WikiPathways WP3644

• WikiPathways: WP3644 (classic)
• Species: Homo sapiens
• Scholia: WP3644

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 3
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 14
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 3

http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/DataNode/b7739 (ART)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/DataNode/ae92c (Glyceraldehyde
3-phosphate
shuttle)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/DataNode/dcc0e (Malate/aspartate 
shuttle)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 14

http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/ffd12 "FADH2" (https://identifiers.org/hmdb/HMDB0001197) and 
FADH2" (https://identifiers.org/hmdb/HMDB0001197)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/ffd12 "FADH2" (https://identifiers.org/hmdb/HMDB0001197) and 
FADH" (https://identifiers.org/hmdb/HMDB0001197)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/ffd12 "FADH" (https://identifiers.org/hmdb/HMDB0001197) and 
FADH2" (https://identifiers.org/hmdb/HMDB0001197)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/ffd12 "FADH" (https://identifiers.org/hmdb/HMDB0001197) and 
FADH" (https://identifiers.org/hmdb/HMDB0001197)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/a11dc "Nicotinamide" (https://identifiers.org/hmdb/HMDB0001488) and 
Nicotinamide" (https://identifiers.org/hmdb/HMDB0001488)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/a11dc "Nicotinamide" (https://identifiers.org/hmdb/HMDB0001488) and 
Nicotinic acid" (https://identifiers.org/hmdb/HMDB0001488)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/a11dc "Nicotinic acid" (https://identifiers.org/hmdb/HMDB0001488) and 
Nicotinamide" (https://identifiers.org/hmdb/HMDB0001488)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/a11dc "Nicotinic acid" (https://identifiers.org/hmdb/HMDB0001488) and 
Nicotinic acid" (https://identifiers.org/hmdb/HMDB0001488)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/eadde "Nicotinamide riboside" (https://identifiers.org/hmdb/HMDB0000855) and 
Nicotinamide riboside" (https://identifiers.org/hmdb/HMDB0000855)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/d6e0d "Nicotinamide" (https://identifiers.org/hmdb/HMDB0001406) and 
Nicotinamide" (https://identifiers.org/hmdb/HMDB0001406)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/f4db5 "Nicotinamide" (https://identifiers.org/hmdb/HMDB0001406) and 
Nicotinamide" (https://identifiers.org/hmdb/HMDB0001406)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/f5409 "L-Tryptophan" (https://identifiers.org/hmdb/HMDB0000929) and 
L-Tryptophan" (https://identifiers.org/hmdb/HMDB0000929)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/f488f "NADH" (https://identifiers.org/hmdb/HMDB0001487) and 
NADH" (https://identifiers.org/hmdb/HMDB0001487)
http://classic.wikipathways.org/instance/WP3644_r118983 http://rdf.wikipathways.org/Pathway/WP3644_r118983/WP/Interaction/dd36b "NAD" (https://identifiers.org/hmdb/HMDB0000902) and 
NAD" (https://identifiers.org/hmdb/HMDB0000902)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations