wikipathways-collection

WikiPathways WP3641

• WikiPathways: WP3641 (classic)
• Species: Escherichia coli

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/DataNode/c8102 (COS)
http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/DataNode/d0ce2 (Electron transport 
chain)
http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/DataNode/d79cc (Gluconeogenesis)
http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/DataNode/b6fd4 (Glycolysis)
http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/DataNode/c3f99 (Krebs cycle)
http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/DataNode/fbcfe (NagP)
http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/DataNode/b2729 (NodC)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 3

http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/WP/Interaction/ida74682dc "Glycerol" (https://identifiers.org/chebi/CHEBI:17754) and 
Glycerol" (https://identifiers.org/chebi/CHEBI:17754)
http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/WP/Interaction/fc7d0 "N-acetylglucosamine" (https://identifiers.org/wikidata/Q27225758) and 
GlcNAc" (https://identifiers.org/chebi/CHEBI:506227)
http://classic.wikipathways.org/instance/WP3641_r125297 http://rdf.wikipathways.org/Pathway/WP3641_r125297/WP/Interaction/fc7d0 "N-acetylglucosamine" (https://identifiers.org/wikidata/Q27225758) and 
N-Acetylglucosamine" (https://identifiers.org/chebi/CHEBI:506227)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations