wikipathways-collection

WikiPathways WP3301

• WikiPathways: WP3301 (classic)
• Species: Homo sapiens
• Scholia: WP3301

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 4
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 7
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 4

http://classic.wikipathways.org/instance/WP3301_r127230 "Cancer-associated stromal fibroblasts
(CAFs)" with graphId bf659
http://classic.wikipathways.org/instance/WP3301_r127230 "Increase cell 
motility" with graphId adf1d
http://classic.wikipathways.org/instance/WP3301_r127230 "Calcium selective/non-selective
cation channel" with graphId a0015
http://classic.wikipathways.org/instance/WP3301_r127230 "Increase traction 
force" with graphId d6592

Possible MIM translocation

Interactions between identical nodes: 7

http://classic.wikipathways.org/instance/WP3301_r127230 http://rdf.wikipathways.org/Pathway/WP3301_r127230/WP/Interaction/id6c8bfc4e "Ca2+" (https://identifiers.org/hmdb/HMDB0000464) and 
Ca2+" (https://identifiers.org/hmdb/HMDB0000464)
http://classic.wikipathways.org/instance/WP3301_r127230 http://rdf.wikipathways.org/Pathway/WP3301_r127230/WP/Interaction/id2bbeb774 "Ca2+" (https://identifiers.org/hmdb/HMDB0000464) and 
Ca2+" (https://identifiers.org/hmdb/HMDB0000464)
http://classic.wikipathways.org/instance/WP3301_r127230 http://rdf.wikipathways.org/Pathway/WP3301_r127230/WP/Interaction/id8e8c77ca "TNNC1" (https://identifiers.org/ensembl/ENSG00000114854) and 
TNNC1" (https://identifiers.org/ensembl/ENSG00000114854)
http://classic.wikipathways.org/instance/WP3301_r127230 http://rdf.wikipathways.org/Pathway/WP3301_r127230/WP/Interaction/id8e8c77ca "TNNC1" (https://identifiers.org/ensembl/ENSG00000114854) and 
Troponin C" (https://identifiers.org/ensembl/ENSG00000114854)
http://classic.wikipathways.org/instance/WP3301_r127230 http://rdf.wikipathways.org/Pathway/WP3301_r127230/WP/Interaction/id8e8c77ca "Troponin C" (https://identifiers.org/ensembl/ENSG00000114854) and 
TNNC1" (https://identifiers.org/ensembl/ENSG00000114854)
http://classic.wikipathways.org/instance/WP3301_r127230 http://rdf.wikipathways.org/Pathway/WP3301_r127230/WP/Interaction/id8e8c77ca "Troponin C" (https://identifiers.org/ensembl/ENSG00000114854) and 
Troponin C" (https://identifiers.org/ensembl/ENSG00000114854)
http://classic.wikipathways.org/instance/WP3301_r127230 http://rdf.wikipathways.org/Pathway/WP3301_r127230/WP/Interaction/idc84e958d "Ca2+" (https://identifiers.org/hmdb/HMDB0000464) and 
Ca2+" (https://identifiers.org/hmdb/HMDB0000464)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations