wikipathways-collection

WikiPathways WP3286

• WikiPathways: WP3286 (classic)
• Species: Homo sapiens
• Scholia: WP3286

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 2
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 5
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 1 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 2

Fails

Interactions with unconnected points

Interactions with unconnected points: 2

• http://classic.wikipathways.org/instance/WP3286_r137968

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Possible MIM translocation

Interactions between identical nodes: 5

• http://classic.wikipathways.org/instance/WP3286_r137968 http://rdf.wikipathways.org/Pathway/WP3286_r137968/WP/Interaction/idc349c047 “Cu+” (https://identifiers.org/chebi/CHEBI:49552) and Cu+” (https://identifiers.org/chebi/CHEBI:49552)
• http://classic.wikipathways.org/instance/WP3286_r137968 http://rdf.wikipathways.org/Pathway/WP3286_r137968/WP/Interaction/id19822eee “COX17” (https://identifiers.org/ensembl/ENSG00000138495) and COX17” (https://identifiers.org/ensembl/ENSG00000138495)
• http://classic.wikipathways.org/instance/WP3286_r137968 http://rdf.wikipathways.org/Pathway/WP3286_r137968/WP/Interaction/idb0736b0f “Cu+” (https://identifiers.org/chebi/CHEBI:49552) and Cu+” (https://identifiers.org/chebi/CHEBI:49552)
• http://classic.wikipathways.org/instance/WP3286_r137968 http://rdf.wikipathways.org/Pathway/WP3286_r137968/WP/Interaction/idd802c4e “Cu+” (https://identifiers.org/chebi/CHEBI:49552) and Cu+” (https://identifiers.org/chebi/CHEBI:49552)
• http://classic.wikipathways.org/instance/WP3286_r137968 http://rdf.wikipathways.org/Pathway/WP3286_r137968/WP/Interaction/id51e5345a “ATOX1” (https://identifiers.org/ensembl/ENSG00000177556) and ATOX1” (https://identifiers.org/ensembl/ENSG00000177556)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations