wikipathways-collection

WikiPathways WP3257

• WikiPathways: WP3257 (classic)
• Species: Bos taurus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 22
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .x we found 1 problem(s):
    • Metabolite can use H₂O instead of H2O: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 22

• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/a7107 (D-dimer)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/f6b17 (D-dimer)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/b2cc7 (Fibrin)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/c4a3d (Fibrin)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/f2509 (Fibrinogen)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/f3dd1 (Fibrinogen)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/ef54e (GPX 1)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/ab76c (HbA1c)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/fcf18 (HbA1c)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/b220a (INS)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/d58ca (INS)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/d1714 (Nicotinamidase)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/d7661 (SAA1)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/ce7eb (SAA2)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/da7bf (SAA3)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/b83ab (SelH)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/d929a (SelP)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/e3718 (SelP)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/c4fa0 (SelR)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/fca10 (Sep15)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/aa8a1 (Trx-(SH)2)
• http://classic.wikipathways.org/instance/WP3257_r120914 http://rdf.wikipathways.org/Pathway/WP3257_r120914/DataNode/b3e60 (Trx-S2)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Water chemical formula can use Unicode

Metabolite can use H₂O instead of H2O: 1

* [http://classic.wikipathways.org/instance/WP3257_r120914](http://classic.wikipathways.org/instance/WP3257_r120914)

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/water