wikipathways-collection

WikiPathways WP3217

• WikiPathways: WP3217 (classic)
• Species: Bos taurus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 16
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 6 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .. all OK!
  • allEmptyDescriptions: .x we found 1 problem(s):
    • Pathways of with an empty description: 1
  • allShortDescriptions: .. all OK!
  • multipleDescriptions: .. all OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .. all OK!
  • calcium: .. all OK!
  • hydron: .. all OK!
  • sodium: .. all OK!
  • potassium: .. all OK!
  • oxygen: .. all OK!
  • carbondioxide: .. all OK!
  • iron2: .. all OK!
  • iron3: .. all OK!
  • copper: .. all OK!
  • copper2: .. all OK!
  • manganese: .. all OK!
  • magnesium: .. all OK!
  • ammonia: .. all OK!
  • chloride: .x we found 1 problem(s):
    • Metabolite can use Cl⁻ instead of Cl-: 1
  • bicarbonate: .x we found 1 problem(s):
    • Metabolite can use HCO₃⁻ instead of HCO3-: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 16

• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/f19d0 (ANOs)
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/c9d0e (ASIC2 [plasma membrane])
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/a15d0 (BESTs)
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/b6c5b (CLCN4/5/6)
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/c1c6e (FTH1(2-183) [cytosol])
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/e886e (FXYD4 [plasma membrane])
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/a38c4 (GABRG3 [plasma membrane])
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/dbc1f (GABRR3 [plasma membrane])
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/c8b33 (HTR3C [plasma membrane])
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/ecff0 (SGK3 [cytosol])
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/bac3d (SLC9B1/C2)
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/eff4e (TPCN1/2)
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/d7b5c (TTYH1-3)
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/a4449 (TTYH2/3)
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/ab6b5 (Ub)
• http://classic.wikipathways.org/instance/WP3217_r140413 http://rdf.wikipathways.org/Pathway/WP3217_r140413/DataNode/ffd29 (WNKs)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Pathway description is empty

Pathways of with an empty description: 1

• http://classic.wikipathways.org/instance/WP3217_r140413

More details at https://www.wikipathways.org/WikiPathwaysCurator/PathwayTests/allEmptyDescriptions

The chloride ion formula can use Unicode

Metabolite can use Cl⁻ instead of Cl-: 1

• http://classic.wikipathways.org/instance/WP3217_r140413

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/chloride

The bicarbonate ion formula can use Unicode

Metabolite can use HCO₃⁻ instead of HCO3-: 1

• http://classic.wikipathways.org/instance/WP3217_r140413

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/bicarbonate