wikipathways-collection

WikiPathways WP3172

• WikiPathways: WP3172
• Scholia: WP3172

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .x we found 1 problem(s):
    • Found 2 pathways that link to deleted pathways
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 97
• Number of assertions: 196
• Number of fails: 2

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 4

http://classic.wikipathways.org/instance/WP3172_rr87521 http://rdf.wikipathways.org/Pathway/WP3172_rr87521/DataNode/a1093 (Pepsin B)
http://classic.wikipathways.org/instance/WP3172_rr87521 http://rdf.wikipathways.org/Pathway/WP3172_rr87521/DataNode/b06e7 (Pepsin C)
http://classic.wikipathways.org/instance/WP3172_rr87521 http://rdf.wikipathways.org/Pathway/WP3172_rr87521/DataNode/c7d94 (Secretin)
http://classic.wikipathways.org/instance/WP3172_rr87521 http://rdf.wikipathways.org/Pathway/WP3172_rr87521/DataNode/bf4a6 (pepsinogen)

PathwayTests.linksToDeletedPathways

Found 2 pathways that link to deleted pathways

http://classic.wikipathways.org/instance/WP3172_rr87521 links to a deleted pathway: WP2599
http://classic.wikipathways.org/instance/WP3172_rr87521 links to a deleted pathway: WP2601