wikipathways-collection

WikiPathways WP2901

• WikiPathways: WP2901
• Scholia: WP2901

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 8
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 97
• Number of assertions: 196
• Number of fails: 2

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 8

http://classic.wikipathways.org/instance/WP2901_rr123067 http://rdf.wikipathways.org/Pathway/WP2901_rr123067/DataNode/ca1e3 (Calcium signaling pathway)
http://classic.wikipathways.org/instance/WP2901_rr123067 http://rdf.wikipathways.org/Pathway/WP2901_rr123067/DataNode/bda5e (Cytokine-cytokine receptor 
interaction pathway)
http://classic.wikipathways.org/instance/WP2901_rr123067 http://rdf.wikipathways.org/Pathway/WP2901_rr123067/DataNode/b7986 (DNA)
http://classic.wikipathways.org/instance/WP2901_rr123067 http://rdf.wikipathways.org/Pathway/WP2901_rr123067/DataNode/c6769 (DNA)
http://classic.wikipathways.org/instance/WP2901_rr123067 http://rdf.wikipathways.org/Pathway/WP2901_rr123067/DataNode/cd4a6 (DNA)
http://classic.wikipathways.org/instance/WP2901_rr123067 http://rdf.wikipathways.org/Pathway/WP2901_rr123067/DataNode/d85e3 (MEKK)
http://classic.wikipathways.org/instance/WP2901_rr123067 http://rdf.wikipathways.org/Pathway/WP2901_rr123067/DataNode/c4be3 (Neuroactive ligand-receptor 
interactionPathway)
http://classic.wikipathways.org/instance/WP2901_rr123067 http://rdf.wikipathways.org/Pathway/WP2901_rr123067/DataNode/abbc1 (PKC)

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP2901_rr123067 "Gonadothropins gene 
expression & Secration" with graphId c13d8