wikipathways-collection

WikiPathways WP2869

• WikiPathways: WP2869 (classic)
• Species: Saccharomyces cerevisiae

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .x we found 1 problem(s):
    • Unexpected protein-protein conversions: 1
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP2869_r110881 http://rdf.wikipathways.org/Pathway/WP2869_r110881/DataNode/dbba6 (Amino acid
permeases)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 1

http://classic.wikipathways.org/instance/WP2869_r110881 http://rdf.wikipathways.org/Pathway/WP2869_r110881/DataNode/dbba6 (Amino acid
permeases)

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 3

http://classic.wikipathways.org/instance/WP2869_r110881 "Transcription of
ribosomal protein genes
ribosome biogenesis genes" with graphId e272d
http://classic.wikipathways.org/instance/WP2869_r110881 "Transcription of
rDNA genes" with graphId abbe1
http://classic.wikipathways.org/instance/WP2869_r110881 "Transcription of
5S RNA genes
tRNA genes" with graphId f7560

InteractionTests.noProteinProteinConversions

Unexpected protein-protein conversions: 1

Saccharomyces cerevisiae http://classic.wikipathways.org/instance/WP2869_r110881 -> https://identifiers.org/sgd/S000003700 https://identifiers.org/sgd/S000002412 http://rdf.wikipathways.org/Pathway/WP2869_r110881/WP/Interaction/id744350d4