wikipathways-collection

WikiPathways WP2852

• WikiPathways: WP2852 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 6
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP2852_r87526 http://rdf.wikipathways.org/Pathway/WP2852_r87526/DataNode/d6e0b (NICD)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 6

http://classic.wikipathways.org/instance/WP2852_r87526 http://rdf.wikipathways.org/Pathway/WP2852_r87526/WP/Interaction/bc452 "Fgf8" (https://identifiers.org/ensembl/ENSMUSG00000025219) and 
Fgf8" (https://identifiers.org/ensembl/ENSMUSG00000025219)
http://classic.wikipathways.org/instance/WP2852_r87526 http://rdf.wikipathways.org/Pathway/WP2852_r87526/WP/Interaction/id139ec6a6 "Fgf8" (https://identifiers.org/ensembl/ENSMUSG00000025219) and 
Fgf8" (https://identifiers.org/ensembl/ENSMUSG00000025219)
http://classic.wikipathways.org/instance/WP2852_r87526 http://rdf.wikipathways.org/Pathway/WP2852_r87526/WP/Interaction/id9b749d6d "Wnt3a" (https://identifiers.org/ensembl/ENSMUSG00000009900) and 
Wnt3a" (https://identifiers.org/ensembl/ENSMUSG00000009900)
http://classic.wikipathways.org/instance/WP2852_r87526 http://rdf.wikipathways.org/Pathway/WP2852_r87526/WP/Interaction/id96bcac66 "Hes1" (https://identifiers.org/ensembl/ENSMUSG00000022528) and 
Hes1" (https://identifiers.org/ensembl/ENSMUSG00000022528)
http://classic.wikipathways.org/instance/WP2852_r87526 http://rdf.wikipathways.org/Pathway/WP2852_r87526/WP/Interaction/idc4fa6cb7 "Wnt3a" (https://identifiers.org/ensembl/ENSMUSG00000009900) and 
Wnt3a" (https://identifiers.org/ensembl/ENSMUSG00000009900)
http://classic.wikipathways.org/instance/WP2852_r87526 http://rdf.wikipathways.org/Pathway/WP2852_r87526/WP/Interaction/idc151bef8 "Fgf8" (https://identifiers.org/ensembl/ENSMUSG00000025219) and 
Fgf8" (https://identifiers.org/ensembl/ENSMUSG00000025219)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations