wikipathways-collection

WikiPathways WP2846

• WikiPathways: WP2846 (classic)
• Species: Homo sapiens
• Scholia: WP2846

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 6
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 1

Fails

Possible MIM translocation

Interactions between identical nodes: 6

http://classic.wikipathways.org/instance/WP2846_r128066 http://rdf.wikipathways.org/Pathway/WP2846_r128066/WP/Interaction/idf0398611 "LDLR" (https://identifiers.org/ensembl/ENSG00000130164) and 
LDLR" (https://identifiers.org/ensembl/ENSG00000130164)
http://classic.wikipathways.org/instance/WP2846_r128066 http://rdf.wikipathways.org/Pathway/WP2846_r128066/WP/Interaction/idd67791b5 "PCSK9" (https://identifiers.org/ensembl/ENSG00000169174) and 
PCSK9" (https://identifiers.org/ensembl/ENSG00000169174)
http://classic.wikipathways.org/instance/WP2846_r128066 http://rdf.wikipathways.org/Pathway/WP2846_r128066/WP/Interaction/id99d51bc7 "LDLR" (https://identifiers.org/ensembl/ENSG00000130164) and 
LDLR" (https://identifiers.org/ensembl/ENSG00000130164)
http://classic.wikipathways.org/instance/WP2846_r128066 http://rdf.wikipathways.org/Pathway/WP2846_r128066/WP/Interaction/id23f4c5bd "LDLR" (https://identifiers.org/ensembl/ENSG00000130164) and 
LDLR" (https://identifiers.org/ensembl/ENSG00000130164)
http://classic.wikipathways.org/instance/WP2846_r128066 http://rdf.wikipathways.org/Pathway/WP2846_r128066/WP/Interaction/ide27a0618 "LDLR" (https://identifiers.org/ensembl/ENSG00000130164) and 
LDLR" (https://identifiers.org/ensembl/ENSG00000130164)
http://classic.wikipathways.org/instance/WP2846_r128066 http://rdf.wikipathways.org/Pathway/WP2846_r128066/WP/Interaction/id4534dd2f "LDLR" (https://identifiers.org/ensembl/ENSG00000130164) and 
LDLR" (https://identifiers.org/ensembl/ENSG00000130164)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations