wikipathways-collection

WikiPathways WP2817

• WikiPathways: WP2817
• Scholia: WP2817

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests
  • curationAndHypothetical: .. all OK!
  • curationAndNeedsWork: .. all OK!
  • curationAndReactome: .. all OK!
  • dataNodeWithoutGraphId: .. all OK!
  • duplicateTitles: .. all OK!
  • emptyLabelOfNodeWithIdentifier: .. all OK!
  • groupsHaveDetail: .. all OK!
  • noTags: .. all OK!
  • nullDataSources: .. all OK!
  • titlesShortEnough: .. all OK!
  • undefinedDataSources: .. all OK!
  • undefinedIdentifier: .. all OK!
  • weirdCharacterTitles: .x we found 1 problem(s):
    • Titles with unexpected characters (only allow alphanumerics and spaces):1
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 4

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 6

http://www.wikipathways.org/instance/WP2817_rr123894 http://rdf.wikipathways.org/Pathway/WP2817_rr123894/DataNode/a0fe6 (CEBP)
http://www.wikipathways.org/instance/WP2817_rr123894 http://rdf.wikipathways.org/Pathway/WP2817_rr123894/DataNode/aac1c (NFI)
http://www.wikipathways.org/instance/WP2817_rr123894 http://rdf.wikipathways.org/Pathway/WP2817_rr123894/DataNode/ab653 (NFKB)
http://www.wikipathways.org/instance/WP2817_rr123894 http://rdf.wikipathways.org/Pathway/WP2817_rr123894/DataNode/e6d5c (NRG)
http://www.wikipathways.org/instance/WP2817_rr123894 http://rdf.wikipathways.org/Pathway/WP2817_rr123894/DataNode/e2a53 (USF)
http://www.wikipathways.org/instance/WP2817_rr123894 http://rdf.wikipathways.org/Pathway/WP2817_rr123894/DataNode/f487b (WFDC)

GeneralTests.weirdCharacterTitles

Titles with unexpected characters (only allow alphanumerics and spaces):1

http://www.wikipathways.org/instance/WP2817_rr123894 'Mammary gland development pathway - Pregnancy and lactation (Stage 3 of 4)' has 2 weird characters

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 3

http://www.wikipathways.org/instance/WP2817_rr123894 "Proliferation" with graphId e2476
http://www.wikipathways.org/instance/WP2817_rr123894 "Differentiation" with graphId fe7d5
http://www.wikipathways.org/instance/WP2817_rr123894 "Involution" with graphId dca10

InteractionTests.possibleTranslocations

Interactions between identical nodes: 1

http://www.wikipathways.org/instance/WP2817_rr123894 http://rdf.wikipathways.org/Pathway/WP2817_rr123894/WP/Interaction/id4e033ea6 "BCL2L1" (https://identifiers.org/ensembl/ENSG00000171552) and 
BCL2L1" (https://identifiers.org/ensembl/ENSG00000171552)

More details at https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations