wikipathways-collection

WikiPathways WP2795

• WikiPathways: WP2795 (classic)
• Species: Homo sapiens
• Scholia: WP2795

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 9
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 7
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 11
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .. all OK!
  • calcium: .x we found 1 problem(s):
    • Metabolite can use Ca²⁺ instead of Ca2+: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 123
• Number of assertions: 247
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 9

• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/eaa3e (BNP)
• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/c3a99 (Endo-1)
• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/b20d6 (GPCR)
• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/def5c (GPCR)
• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/b37d8 (PLC)
• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/c6923 (Pol II)
• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/ebe79 (RAS)
• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/fb98a (ROH)
• http://classic.wikipathways.org/instance/WP2795_r137746 http://rdf.wikipathways.org/Pathway/WP2795_r137746/DataNode/b05a3 (RTKs)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 7

• http://classic.wikipathways.org/instance/WP2795_r137746 “Stretch” with graphId b1dc6
• http://classic.wikipathways.org/instance/WP2795_r137746 “Protein Synthesis” with graphId aa186
• http://classic.wikipathways.org/instance/WP2795_r137746 “Stress” with graphId a47ce
• http://classic.wikipathways.org/instance/WP2795_r137746 “Stress” with graphId bb42f
• http://classic.wikipathways.org/instance/WP2795_r137746 “PI3K” with graphId dcb52
• http://classic.wikipathways.org/instance/WP2795_r137746 “Transcription factors” with graphId ad498
• http://classic.wikipathways.org/instance/WP2795_r137746 “Cellular Proteins” with graphId d9237

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Interactions with unconnected points

Interactions with unconnected points: 11

• http://classic.wikipathways.org/instance/WP2795_r137746

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Calcium chemical formula can use Unicode

Metabolite can use Ca²⁺ instead of Ca2+: 1

• http://classic.wikipathways.org/instance/WP2795_r137746

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/calcium