wikipathways-collection

WikiPathways WP2583

• WikiPathways: WP2583 (classic)
• Species: Homo sapiens
• Scholia: WP2583

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 11
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 11

http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/dc90a (AP-1 )
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/a8ece (B7-1/ B7-2)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/f7b20 (B7-1/ B7-2)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/eeb8e (Bcl-xL)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/cf1d5 (Erk)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/ff54e (LAT / SLP-76 scaffold complex)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/da6cd (MHC peptide)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/f2340 (P13K)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/c951f (PD-L1)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/e35aa (Ras-GDP)
http://classic.wikipathways.org/instance/WP2583_r117181 http://rdf.wikipathways.org/Pathway/WP2583_r117181/DataNode/f002d (Ras-GTP)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP2583_r117181 "Survival" with graphId d8ce7
http://classic.wikipathways.org/instance/WP2583_r117181 "Proliferation" with graphId bdd9d