wikipathways-collection

WikiPathways WP2578

• WikiPathways: WP2578 (classic)
• Species: Caenorhabditis elegans

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 4
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

http://classic.wikipathways.org/instance/WP2578_r123105 http://rdf.wikipathways.org/Pathway/WP2578_r123105/DataNode/b42c4 (BiP/ GRP78)
http://classic.wikipathways.org/instance/WP2578_r123105 http://rdf.wikipathways.org/Pathway/WP2578_r123105/DataNode/c255f (BiP/ GRP78)
http://classic.wikipathways.org/instance/WP2578_r123105 http://rdf.wikipathways.org/Pathway/WP2578_r123105/DataNode/d13ed (BiP/ GRP78)
http://classic.wikipathways.org/instance/WP2578_r123105 http://rdf.wikipathways.org/Pathway/WP2578_r123105/DataNode/eb96f (Development)
http://classic.wikipathways.org/instance/WP2578_r123105 http://rdf.wikipathways.org/Pathway/WP2578_r123105/DataNode/b6535 (ER homeostasis)
http://classic.wikipathways.org/instance/WP2578_r123105 http://rdf.wikipathways.org/Pathway/WP2578_r123105/DataNode/ea7ab (Translation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 4

http://classic.wikipathways.org/instance/WP2578_r123105 "ER Stress (unfolded proteins)" with graphId e8aa5
http://classic.wikipathways.org/instance/WP2578_r123105 "21 genes induced  by PEK-1" with graphId c3248
http://classic.wikipathways.org/instance/WP2578_r123105 "139 genes induced  by IRE-1/XBP-1 pathway" with graphId ff1a5
http://classic.wikipathways.org/instance/WP2578_r123105 "Environmental stress (e.g. heat, hypoxia, pathogens)" with graphId c6a54