wikipathways-collection

WikiPathways WP2353

• WikiPathways: WP2353 (classic)
• Species: Zea mays

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 66
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 66

http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/b2a6e (ADP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/c4273 (ADP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/d2794 (ADP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/f0aeb (ADP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/dec2d (AMP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/dff99 (AMP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/cdb2b (GTP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/b61e1 (H2O)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/e51e3 (HCOOH)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a2ef4 (NADP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/ca1e6 (NADPH)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a0249 (PO4)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/bb852 (PO4)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/d0f21 (PO4)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/ee684 (PO4)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/e14c9 (PPi)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/f6ef5 (PPi)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/b390f (THF and one carbon derivative)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/cf0cf (THF and one carbon derivative)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/eef12 (THF and one carbon derivative)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/f5887 (THF and one carbon derivative)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/f7055 (THF and one carbon derivative)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/e3bd4 (UDP)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/b663f (UDP-glucose:p-aminobenzoate glucosyltransferase)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/d8aa9 (UDP-glucose:pterin glycosyltransferase)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/ca8cf (Uridine 5'-diphosphate glucose (UDPG))
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a5e2f (aminodeoxychorismate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/f6255 (aminodeoxychorismate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/e958e (dihydromethyldihydropterin pyrophosphate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/b4d24 (dihydromonapterin)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/d01e1 (dihydroneopterin)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a9db0 (dihydroneopterin monophosphate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/bd98b (dihydroneopterin monophosphate phosphatase)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/c1ca4 (dihydroneopterin triphosphate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a5658 (dihydroneopterin, dihydromonapterin)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a3c3b (dihydropteroate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/cd0fc (dihydropteroate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/c55bc (folate monoglutamate transporter)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a39e9 (folate polyglutamate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/bc2b3 (folate polyglutamate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/df675 (folate polyglutamate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/d3ac0 (folate polyglutamate transporter)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a2f36 (folate transporter)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/ad965 (folate transporter)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/ffa54 (folate transporter)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a626e (glutamate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/b043d (glutamate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/d5d1e (glutamate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/e423e (glutamate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/fa46c (glutamate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/fd83a (glutamine)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/d2494 (hydromethyldihydropterin)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/ec94a (hydromethyldihydropterin)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/c47c8 (hydromethyldihydropterin transporter)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/bef2e (hydroxymethyldihydropterin pyrophosphate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/a7872 (p-aminobenzoate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/e0bd2 (p-aminobenzoate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/ff076 (p-aminobenzoate)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/e00bb (p-aminobenzoate diffusion)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/f04a7 (p-aminobenzoate diffusion)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/cdc64 (p-aminobenzoate glucose ester)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/f35e5 (p-aminobenzoate glucose ester)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/f6a3f (p-aminobenzoate glucose ester transporter)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/e5179 (pterin glycosides)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/fe0c2 (pterin transporter)
http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/c9117 (pyruvate)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 1

http://classic.wikipathways.org/instance/WP2353_r94733 http://rdf.wikipathways.org/Pathway/WP2353_r94733/DataNode/cf0cf (THF and one carbon derivative)