wikipathways-collection

WikiPathways WP2328

• WikiPathways: WP2328 (classic)
• Species: Homo sapiens
• Scholia: WP2328

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 12
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 12

http://classic.wikipathways.org/instance/WP2328_r120805 "Allograft Rejection" with graphId c7931
http://classic.wikipathways.org/instance/WP2328_r120805 "Fibrosis" with graphId a12ea
http://classic.wikipathways.org/instance/WP2328_r120805 "C5 CONVERTASE" with graphId f7455
http://classic.wikipathways.org/instance/WP2328_r120805 "MEMBRANE ATTACK 
COMPLEX ACTIVATION" with graphId a9183
http://classic.wikipathways.org/instance/WP2328_r120805 "ATTACK
ENDOTHELIAL
CELLS" with graphId e3b9e
http://classic.wikipathways.org/instance/WP2328_r120805 "TCR" with graphId b2e10
http://classic.wikipathways.org/instance/WP2328_r120805 "TCR" with graphId c3f11
http://classic.wikipathways.org/instance/WP2328_r120805 "TH1
cell" with graphId c2fd6
http://classic.wikipathways.org/instance/WP2328_r120805 "Calcineurin Inhibitor 
Nephrotoxicity" with graphId a35be
http://classic.wikipathways.org/instance/WP2328_r120805 "Y-CVF" with graphId da48e
http://classic.wikipathways.org/instance/WP2328_r120805 "IgG1" with graphId a6a55
http://classic.wikipathways.org/instance/WP2328_r120805 "C3 CONVERTASE" with graphId ce71f

Possible MIM translocation

Interactions between identical nodes: 2

http://classic.wikipathways.org/instance/WP2328_r120805 http://rdf.wikipathways.org/Pathway/WP2328_r120805/WP/Interaction/b2d1b "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP2328_r120805 http://rdf.wikipathways.org/Pathway/WP2328_r120805/WP/Interaction/c61ca "C5" (https://identifiers.org/ensembl/ENSG00000106804) and 
C5" (https://identifiers.org/ensembl/ENSG00000106804)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations