wikipathways-collection

WikiPathways WP228

• WikiPathways: WP228 (classic)
• Species: Saccharomyces cerevisiae

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 4
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Possible MIM translocation

Interactions between identical nodes: 4

http://classic.wikipathways.org/instance/WP228_r109414 http://rdf.wikipathways.org/Pathway/WP228_r109414/WP/Interaction/db959 "ribose-5-phosphate" (https://identifiers.org/cas/3615-55-2) and 
ribose-5-phosphate" (https://identifiers.org/cas/3615-55-2)
http://classic.wikipathways.org/instance/WP228_r109414 http://rdf.wikipathways.org/Pathway/WP228_r109414/WP/Interaction/db959 "ribose-5-phosphate" (https://identifiers.org/cas/3615-55-2) and 
ribose-1-phosphate" (https://identifiers.org/cas/3615-55-2)
http://classic.wikipathways.org/instance/WP228_r109414 http://rdf.wikipathways.org/Pathway/WP228_r109414/WP/Interaction/db959 "ribose-1-phosphate" (https://identifiers.org/cas/3615-55-2) and 
ribose-5-phosphate" (https://identifiers.org/cas/3615-55-2)
http://classic.wikipathways.org/instance/WP228_r109414 http://rdf.wikipathways.org/Pathway/WP228_r109414/WP/Interaction/db959 "ribose-1-phosphate" (https://identifiers.org/cas/3615-55-2) and 
ribose-1-phosphate" (https://identifiers.org/cas/3615-55-2)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

At least one reference

Found 1 pathways with zero (PubMed) references

* [http://classic.wikipathways.org/instance/WP228_r109414](http://classic.wikipathways.org/instance/WP228_r109414) 'Deoxyribose phosphate metabolism' in Saccharomyces cerevisiae has zero references; 

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference