wikipathways-collection

WikiPathways WP2272

• WikiPathways: WP2272 (classic)
• Species: Homo sapiens
• Scholia: WP2272

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 15
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP2272_r118427 http://rdf.wikipathways.org/Pathway/WP2272_r118427/DataNode/f9761 (Type III protein
secretion system)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 15

http://classic.wikipathways.org/instance/WP2272_r118427 "outer membrane protein" with graphId a1180
http://classic.wikipathways.org/instance/WP2272_r118427 "Cytoskeleton
rearrangement" with graphId b51df
http://classic.wikipathways.org/instance/WP2272_r118427 "Retraction of filopodium" with graphId a7d42
http://classic.wikipathways.org/instance/WP2272_r118427 "Disruption of barrier
function and increase in
monolayer permeability" with graphId e6442
http://classic.wikipathways.org/instance/WP2272_r118427 "Pedestal formation" with graphId adf87
http://classic.wikipathways.org/instance/WP2272_r118427 "Disruption of adherens junctions" with graphId f99af
http://classic.wikipathways.org/instance/WP2272_r118427 "Filipodium formation" with graphId f7913
http://classic.wikipathways.org/instance/WP2272_r118427 "Stress fiber formation" with graphId bdb5d
http://classic.wikipathways.org/instance/WP2272_r118427 "Redistribution" with graphId df6e5
http://classic.wikipathways.org/instance/WP2272_r118427 "Flagellin" with graphId c0504
http://classic.wikipathways.org/instance/WP2272_r118427 "Inflammation" with graphId dca84
http://classic.wikipathways.org/instance/WP2272_r118427 "Intestinal tract
Kidney .......
Inhibition of protein synthesis" with graphId a2e36
http://classic.wikipathways.org/instance/WP2272_r118427 "Alterations in the
IF network architecture" with graphId ccb50
http://classic.wikipathways.org/instance/WP2272_r118427 "LPS" with graphId b77e1
http://classic.wikipathways.org/instance/WP2272_r118427 "Disruption of tight junctions" with graphId d2eb2