wikipathways-collection

WikiPathways WP2209

• WikiPathways: WP2209 (classic)
• Species: Oryza sativa

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 2
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

http://classic.wikipathways.org/instance/WP2209_r117419 http://rdf.wikipathways.org/Pathway/WP2209_r117419/DataNode/d9f36 (3β-Hydroxy-9β-pimara-7,15-diene-19,6β-olide)
http://classic.wikipathways.org/instance/WP2209_r117419 http://rdf.wikipathways.org/Pathway/WP2209_r117419/DataNode/a9361 (9-beta-primara-7,15-diene)
http://classic.wikipathways.org/instance/WP2209_r117419 http://rdf.wikipathways.org/Pathway/WP2209_r117419/DataNode/da315 (Catalyst reactions)
http://classic.wikipathways.org/instance/WP2209_r117419 http://rdf.wikipathways.org/Pathway/WP2209_r117419/DataNode/b08f3 (Syn-copalyl Diphosphate)
http://classic.wikipathways.org/instance/WP2209_r117419 http://rdf.wikipathways.org/Pathway/WP2209_r117419/DataNode/aa3cd (Upregulation of gene expression)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 2

http://classic.wikipathways.org/instance/WP2209_r117419 http://rdf.wikipathways.org/Pathway/WP2209_r117419/DataNode/da315 (Catalyst reactions)
http://classic.wikipathways.org/instance/WP2209_r117419 http://rdf.wikipathways.org/Pathway/WP2209_r117419/DataNode/aa3cd (Upregulation of gene expression)