wikipathways-collection

WikiPathways WP1982

• WikiPathways: WP1982 (classic)
• Species: Homo sapiens
• Scholia: WP1982

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 11
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 9
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 11

http://classic.wikipathways.org/instance/WP1982_r127880 "SRE" with graphId dbd64
http://classic.wikipathways.org/instance/WP1982_r127880 "Gene" with graphId d9356
http://classic.wikipathways.org/instance/WP1982_r127880 "Cofactor" with graphId d705d
http://classic.wikipathways.org/instance/WP1982_r127880 "SRE" with graphId bc181
http://classic.wikipathways.org/instance/WP1982_r127880 "Cholesterol 
synthesis" with graphId b0f09
http://classic.wikipathways.org/instance/WP1982_r127880 "Gene" with graphId ee1fa
http://classic.wikipathways.org/instance/WP1982_r127880 "Cofactor" with graphId cfeef
http://classic.wikipathways.org/instance/WP1982_r127880 "Fatty acid
degradation" with graphId ec5e9
http://classic.wikipathways.org/instance/WP1982_r127880 "Cholesterol 
uptake" with graphId b6757
http://classic.wikipathways.org/instance/WP1982_r127880 "Cholesterol 
efflux" with graphId f3aa7
http://classic.wikipathways.org/instance/WP1982_r127880 "Fatty acid 
synthesis" with graphId d7664

Possible MIM translocation

Interactions between identical nodes: 9

http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "nSREBP" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "nSREBP" (https://identifiers.org/ensembl/ENSG00000072310) and 
SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "nSREBP" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r127880 http://rdf.wikipathways.org/Pathway/WP1982_r127880/WP/Interaction/id1a728c5d "nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations