wikipathways-collection

WikiPathways WP19

• WikiPathways: WP19
• Scholia: WP19

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 4 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 2

Fails

InteractionTests.possibleTranslocations

Interactions between identical nodes: 2

http://www.wikipathways.org/instance/WP19_rr125413 http://rdf.wikipathways.org/Pathway/WP19_rr125413/WP/Interaction/id687a0d0e_1 "L-malate" (https://identifiers.org/chebi/CHEBI:15589) and 
L-malate" (https://identifiers.org/chebi/CHEBI:15589)
http://www.wikipathways.org/instance/WP19_rr125413 http://rdf.wikipathways.org/Pathway/WP19_rr125413/WP/Interaction/id687a0d0e_2 "L-malate" (https://identifiers.org/chebi/CHEBI:15589) and 
L-malate" (https://identifiers.org/chebi/CHEBI:15589)

More details at https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations

ReferencesTests.atLeastOneReference

Found 1 pathways with zero (PubMed) references

http://www.wikipathways.org/instance/WP19_rr125413 'TCA cycle' in Danio rerio has zero references; 

More details at https://wikipathways.github.io/WikiPathwaysCurator/ReferencesTests/atLeastOneReference