wikipathways-collection

WikiPathways WP176

• WikiPathways: WP176 (classic)
• Species: Homo sapiens
• Scholia: WP176

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .x we found 1 problem(s):
    • Unexpected metabolite to non-metabolite conversions:4
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 62
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

No metabolite to non-metabolite conversions

Unexpected metabolite to non-metabolite conversions:4

• Homo sapiens http://classic.wikipathways.org/instance/WP176_r121696 → https://identifiers.org/chebi/CHEBI:37445 https://identifiers.org/ncbigene/1401 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/bc3ed
  
• Homo sapiens http://classic.wikipathways.org/instance/WP176_r121696 → https://identifiers.org/hmdb/HMDB0001491 https://identifiers.org/ncbigene/1401 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c3e34
  
• Homo sapiens http://classic.wikipathways.org/instance/WP176_r121696 → https://identifiers.org/chebi/CHEBI:37445 https://identifiers.org/ncbigene/6347 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/d8574
  
• Homo sapiens http://classic.wikipathways.org/instance/WP176_r121696 → https://identifiers.org/chebi/CHEBI:37445 https://identifiers.org/ncbigene/7157 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/f457b
  

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/noMetaboliteToNonMetaboliteConversions

Possible MIM translocation

Interactions between identical nodes: 62

http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/d7dca "Fructosamine" (https://identifiers.org/hmdb/HMDB0002030) and 
Fructosamine" (https://identifiers.org/hmdb/HMDB0002030)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e7e4c "VLDL-TAG" (https://identifiers.org/chebi/CHEBI:47776) and 
VLDL-TAG" (https://identifiers.org/chebi/CHEBI:47776)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a4603 "Magnesium" (https://identifiers.org/hmdb/HMDB0000547) and 
Magnesium" (https://identifiers.org/hmdb/HMDB0000547)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a9e4a "8-Isoprostaglandin F2a" (https://identifiers.org/hmdb/HMDB0005083) and 
8-Isoprostaglandin F2a" (https://identifiers.org/hmdb/HMDB0005083)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a9f6c "Serine" (https://identifiers.org/hmdb/HMDB0000187) and 
Serine" (https://identifiers.org/hmdb/HMDB0000187)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/cecdb "Cysteine" (https://identifiers.org/hmdb/HMDB0000574) and 
Cysteine" (https://identifiers.org/hmdb/HMDB0000574)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/fcb90 "Nitrotyrosine" (https://identifiers.org/hmdb/HMDB0001904) and 
Nitrotyrosine" (https://identifiers.org/hmdb/HMDB0001904)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/dba81 "Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/dba81 "Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/dba81 "Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/dba81 "Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/d5659 "Chlorine" (https://identifiers.org/hmdb/HMDB0000492) and 
Chlorine" (https://identifiers.org/hmdb/HMDB0000492)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/f1dff "S-Adenosylhomocysteine" (https://identifiers.org/hmdb/HMDB0000939) and 
S-Adenosylhomocysteine" (https://identifiers.org/hmdb/HMDB0000939)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c53a8 "5-methyl-THF" (https://identifiers.org/hmdb/HMDB0001396) and 
5-methyl-THF" (https://identifiers.org/hmdb/HMDB0001396)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e54cf "Cholesterol" (https://identifiers.org/hmdb/HMDB0000067) and 
Cholesterol" (https://identifiers.org/hmdb/HMDB0000067)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e6d26 "Folic acid" (https://identifiers.org/hmdb/HMDB0000121) and 
Folic acid" (https://identifiers.org/hmdb/HMDB0000121)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/b2a6d "PGE1" (https://identifiers.org/hmdb/HMDB0001442) and 
PGE1" (https://identifiers.org/hmdb/HMDB0001442)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/f5d66 "Thromboxane B2" (https://identifiers.org/hmdb/HMDB0003252) and 
Thromboxane B2" (https://identifiers.org/hmdb/HMDB0003252)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/be290 "Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/be290 "Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/be290 "Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/be290 "Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a9c42 "8-OHdG" (https://identifiers.org/hmdb/HMDB0003333) and 
8-OHdG" (https://identifiers.org/hmdb/HMDB0003333)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e4b44 "Folate" (https://identifiers.org/chebi/CHEBI:37445) and 
Folate" (https://identifiers.org/chebi/CHEBI:37445)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/dac9d "Iron" (https://identifiers.org/hmdb/HMDB0000692) and 
Iron" (https://identifiers.org/hmdb/HMDB0000692)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e558b "VLDL/APOB" (https://identifiers.org/chebi/CHEBI:39027) and 
VLDL/APOB" (https://identifiers.org/chebi/CHEBI:39027)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e558b "VLDL/APOB" (https://identifiers.org/chebi/CHEBI:39027) and 
VLDL" (https://identifiers.org/chebi/CHEBI:39027)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e558b "VLDL" (https://identifiers.org/chebi/CHEBI:39027) and 
VLDL/APOB" (https://identifiers.org/chebi/CHEBI:39027)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e558b "VLDL" (https://identifiers.org/chebi/CHEBI:39027) and 
VLDL" (https://identifiers.org/chebi/CHEBI:39027)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/f3450 "NO" (https://identifiers.org/hmdb/HMDB0003378) and 
NO" (https://identifiers.org/hmdb/HMDB0003378)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/ea803 "TAG" (https://identifiers.org/chebi/CHEBI:17855) and 
TAG" (https://identifiers.org/chebi/CHEBI:17855)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c8299 "Methionine" (https://identifiers.org/hmdb/HMDB0000696) and 
Methionine" (https://identifiers.org/hmdb/HMDB0000696)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a5a1c "Pyridoxal 5'-phosphate" (https://identifiers.org/hmdb/HMDB0001491) and 
Pyridoxal 5'-phosphate" (https://identifiers.org/hmdb/HMDB0001491)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a1eb7 "Manganese" (https://identifiers.org/hmdb/HMDB0001333) and 
Manganese" (https://identifiers.org/hmdb/HMDB0001333)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/ad82b "HDL-C" (https://identifiers.org/chebi/CHEBI:47775) and 
HDL-C" (https://identifiers.org/chebi/CHEBI:47775)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a02ac "NADPH" (https://identifiers.org/hmdb/HMDB0000221) and 
NADPH" (https://identifiers.org/hmdb/HMDB0000221)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a68b8 "S-Adenosylmethionine" (https://identifiers.org/hmdb/HMDB0001185) and 
S-Adenosylmethionine" (https://identifiers.org/hmdb/HMDB0001185)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a3b5b "Zinc" (https://identifiers.org/hmdb/HMDB0015532) and 
Zinc" (https://identifiers.org/hmdb/HMDB0015532)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/ed0cf "Homocysteine" (https://identifiers.org/hmdb/HMDB0000742) and 
Homocysteine" (https://identifiers.org/hmdb/HMDB0000742)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL/APOA1" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL/SAA" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL/APOA1" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL/APOA1" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL/APOA1" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL/APOA1" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL/SAA" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL/SAA" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL/SAA" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL/APOA1" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c625f "HDL/SAA" (https://identifiers.org/chebi/CHEBI:39025) and 
HDL/SAA" (https://identifiers.org/chebi/CHEBI:39025)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/fc2dd "Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/fc2dd "Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/fc2dd "Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(I)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/fc2dd "Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174) and 
Cob(II)alamin" (https://identifiers.org/hmdb/HMDB0002174)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a10d4 "PGE2" (https://identifiers.org/hmdb/HMDB0001220) and 
PGE2" (https://identifiers.org/hmdb/HMDB0001220)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/c5e56 "Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/e23a1 "LDL" (https://identifiers.org/chebi/CHEBI:39026) and 
LDL" (https://identifiers.org/chebi/CHEBI:39026)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/a0a01 "oxLDL" (https://identifiers.org/chebi/CHEBI:60151) and 
oxLDL" (https://identifiers.org/chebi/CHEBI:60151)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/b318a "Glycine" (https://identifiers.org/hmdb/HMDB0000123) and 
Glycine" (https://identifiers.org/hmdb/HMDB0000123)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/f78dc "F2-Isoprostane" (https://identifiers.org/wikidata/Q33659470) and 
F2-Isoprostane" (https://identifiers.org/wikidata/Q33659470)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/ae60e "D-dimer" (https://identifiers.org/wikidata/Q2162109) and 
D-dimer" (https://identifiers.org/wikidata/Q2162109)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/bf21a "NADP+" (https://identifiers.org/hmdb/HMDB0000217) and 
NADP+" (https://identifiers.org/hmdb/HMDB0000217)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/bd2d2 "Fibrin" (https://identifiers.org/wikidata/Q27205) and 
Fibrin" (https://identifiers.org/wikidata/Q27205)
http://classic.wikipathways.org/instance/WP176_r121696 http://rdf.wikipathways.org/Pathway/WP176_r121696/WP/Interaction/adba7 "PGF2a" (https://identifiers.org/hmdb/HMDB0001139) and 
PGF2a" (https://identifiers.org/hmdb/HMDB0001139)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations