wikipathways-collection

WikiPathways WP176

• WikiPathways: WP176 (classic)
• Species: Homo sapiens
• Scholia: WP176

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 8
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .x we found 1 problem(s):
    • Metabolite can use H₂O instead of H2O: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 2

Fails

Possible MIM translocation

Interactions between identical nodes: 8

• http://classic.wikipathways.org/instance/WP176_r137453 http://rdf.wikipathways.org/Pathway/WP176_r137453/WP/Interaction/dba81 “Cob(I)alamin” (https://identifiers.org/hmdb/HMDB0002174) and Cob(I)alamin” (https://identifiers.org/hmdb/HMDB0002174)
• http://classic.wikipathways.org/instance/WP176_r137453 http://rdf.wikipathways.org/Pathway/WP176_r137453/WP/Interaction/dba81 “Cob(I)alamin” (https://identifiers.org/hmdb/HMDB0002174) and Cob(II)alamin” (https://identifiers.org/hmdb/HMDB0002174)
• http://classic.wikipathways.org/instance/WP176_r137453 http://rdf.wikipathways.org/Pathway/WP176_r137453/WP/Interaction/dba81 “Cob(II)alamin” (https://identifiers.org/hmdb/HMDB0002174) and Cob(I)alamin” (https://identifiers.org/hmdb/HMDB0002174)
• http://classic.wikipathways.org/instance/WP176_r137453 http://rdf.wikipathways.org/Pathway/WP176_r137453/WP/Interaction/dba81 “Cob(II)alamin” (https://identifiers.org/hmdb/HMDB0002174) and Cob(II)alamin” (https://identifiers.org/hmdb/HMDB0002174)
• http://classic.wikipathways.org/instance/WP176_r137453 http://rdf.wikipathways.org/Pathway/WP176_r137453/WP/Interaction/be290 “Cob(I)alamin” (https://identifiers.org/hmdb/HMDB0002174) and Cob(I)alamin” (https://identifiers.org/hmdb/HMDB0002174)
• http://classic.wikipathways.org/instance/WP176_r137453 http://rdf.wikipathways.org/Pathway/WP176_r137453/WP/Interaction/be290 “Cob(I)alamin” (https://identifiers.org/hmdb/HMDB0002174) and Cob(II)alamin” (https://identifiers.org/hmdb/HMDB0002174)
• http://classic.wikipathways.org/instance/WP176_r137453 http://rdf.wikipathways.org/Pathway/WP176_r137453/WP/Interaction/be290 “Cob(II)alamin” (https://identifiers.org/hmdb/HMDB0002174) and Cob(I)alamin” (https://identifiers.org/hmdb/HMDB0002174)
• http://classic.wikipathways.org/instance/WP176_r137453 http://rdf.wikipathways.org/Pathway/WP176_r137453/WP/Interaction/be290 “Cob(II)alamin” (https://identifiers.org/hmdb/HMDB0002174) and Cob(II)alamin” (https://identifiers.org/hmdb/HMDB0002174)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

Water chemical formula can use Unicode

Metabolite can use H₂O instead of H2O: 1

* [http://classic.wikipathways.org/instance/WP176_r137453](http://classic.wikipathways.org/instance/WP176_r137453)

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/water