wikipathways-collection

WikiPathways WP1530

• WikiPathways: WP1530 (classic)
• Species: Homo sapiens
• Scholia: WP1530

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 10
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 22
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 10

http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/d3382 (AKT1)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/b5b2b (MIR15a/16-1)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/e92a3 (MIR195/497)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/ec2ef (MIR29b-1/29a)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/d1ecc (hsa-let-7a-1/7d)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/d54d0 (hsa-mir-143/145)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/f9345 (hsa-mir-15b/16-2)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/fa6f7 (hsa-mir-15b/16-2)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/f3f53 (hsa-mir-34b/34c)
http://classic.wikipathways.org/instance/WP1530_r126392 http://rdf.wikipathways.org/Pathway/WP1530_r126392/DataNode/e4d46 (miR-143/145 polycistron)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 22

http://classic.wikipathways.org/instance/WP1530_r126392 "DNA adduct" with graphId ada6b
http://classic.wikipathways.org/instance/WP1530_r126392 "Exogenous: Cigarette Smoke Caffeine Radiation (UV) Clastogenes Hypoxia Genotoxic drugs" with graphId c66cb
http://classic.wikipathways.org/instance/WP1530_r126392 "DNA repair" with graphId b2d5e
http://classic.wikipathways.org/instance/WP1530_r126392 "G1/S transition" with graphId f616d
http://classic.wikipathways.org/instance/WP1530_r126392 "Blocked transcription" with graphId ac2a8
http://classic.wikipathways.org/instance/WP1530_r126392 "Bulky DNA lesion" with graphId ac2ae
http://classic.wikipathways.org/instance/WP1530_r126392 "Chromatin alteration" with graphId a3121
http://classic.wikipathways.org/instance/WP1530_r126392 "Cell-cycle progression" with graphId cc475
http://classic.wikipathways.org/instance/WP1530_r126392 "G2/M transition" with graphId ac23e
http://classic.wikipathways.org/instance/WP1530_r126392 "Double-strand breaks" with graphId e487c
http://classic.wikipathways.org/instance/WP1530_r126392 "G2/M checkpoint" with graphId df6d7
http://classic.wikipathways.org/instance/WP1530_r126392 "Chromatin remodelling" with graphId f1e53
http://classic.wikipathways.org/instance/WP1530_r126392 "Specialized: Somatic hypermutaion V(D)J recombination Class switching" with graphId def5e
http://classic.wikipathways.org/instance/WP1530_r126392 "ROS" with graphId c39ef
http://classic.wikipathways.org/instance/WP1530_r126392 "Cell survival" with graphId c3474
http://classic.wikipathways.org/instance/WP1530_r126392 "ROS" with graphId cff96
http://classic.wikipathways.org/instance/WP1530_r126392 "Replication stress" with graphId f09b8
http://classic.wikipathways.org/instance/WP1530_r126392 "Blocked replication" with graphId be5fc
http://classic.wikipathways.org/instance/WP1530_r126392 "Endogenous: Collapsed replication forks Single stranded DNA replication breaks Free radicals (ROS)" with graphId b5760
http://classic.wikipathways.org/instance/WP1530_r126392 " G2/M Checkpoint" with graphId e8894
http://classic.wikipathways.org/instance/WP1530_r126392 "DNA repair and  damage prevention" with graphId b1482
http://classic.wikipathways.org/instance/WP1530_r126392 "DNA damage ATM dependent" with graphId ef5b8