wikipathways-collection

WikiPathways WP1493

• WikiPathways: WP1493 (classic)
• Species: Zea mays

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 15
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 61
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 5
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .x we found 1 problem(s):
    • Metabolite can use H₂O instead of H2O: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 15

• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/a8d66 (2-oxoglutarate/malate translocator)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/cc760 (2-oxoglutarate/malate translocator)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/de7a6 (ATP/ADP translocator)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/d1830 (GPT)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/f5a10 (MEP1)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/ae379 (MEP3)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/e5f85 (MEP3)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/a8e5d (PPDK-regulatory protein)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/e77ee (Phosphoenolpyruvate transporter)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/a6a30 (Pi-triose phosphate antiporter)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/bd730 (Pi-triose phosphate antiporter)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/ca8ac (Pi-triose phosphate antiporter)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/fdfda (Pi-triose phosphate antiporter)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/e2244 (RBCL)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/DataNode/ec1f0 (Rubisco activase)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with unconnected points

Interactions with unconnected points: 61

• http://classic.wikipathways.org/instance/WP1493_r125277

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Possible MIM translocation

Interactions between identical nodes: 5

• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/WP/Interaction/d1588 “L-Aspartate” (https://identifiers.org/chebi/CHEBI:29993) and L-Aspartate” (https://identifiers.org/chebi/CHEBI:29993)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/WP/Interaction/e3784 “D-ribulose-1,5-bisphosphate” (https://identifiers.org/chebi/CHEBI:16710) and D-ribulose-1,5-bisphosphate” (https://identifiers.org/chebi/CHEBI:16710)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/WP/Interaction/e51e5 “Oxaloacetic acid” (https://identifiers.org/chebi/CHEBI:30744) and Oxaloacetic acid” (https://identifiers.org/chebi/CHEBI:30744)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/WP/Interaction/ca170 “CO2” (https://identifiers.org/chebi/CHEBI:16526) and CO2” (https://identifiers.org/chebi/CHEBI:16526)
• http://classic.wikipathways.org/instance/WP1493_r125277 http://rdf.wikipathways.org/Pathway/WP1493_r125277/WP/Interaction/b8e60 “CO2” (https://identifiers.org/chebi/CHEBI:16526) and CO2” (https://identifiers.org/chebi/CHEBI:16526)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

Water chemical formula can use Unicode

Metabolite can use H₂O instead of H2O: 1

* [http://classic.wikipathways.org/instance/WP1493_r125277](http://classic.wikipathways.org/instance/WP1493_r125277)

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/water