wikipathways-collection

WikiPathways WP1356

• WikiPathways: WP1356 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 17
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 17

• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/ee5 (Acetyl-CoA)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/c71 (Dihydroxyacetone Phosphate)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/ad7 (ENO1B)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/a7e (Fructose-6-phosphate)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/c42 (GAPD)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/a79 (Glucose)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/a67 (Glucose-6-phosphate)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/fb7 (Glyceraldehyde-3-phosphate)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/f9f (LDHAL6B)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/f99 (LDHC)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/d2a (Lactate)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/a68 (Malate)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/db8 (Malate)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/c87 (PDHA2)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/b33 (PGK2)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/ab5 (Phosphoenolpyruvate)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/DataNode/f3484 (TCA Cycle)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 3

• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/WP/Interaction/e9595_1 “L-Aspartic acid” (https://identifiers.org/hmdb/HMDB0000191) and L-Aspartic acid” (https://identifiers.org/hmdb/HMDB0000191)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/WP/Interaction/e9595_2 “L-Aspartic acid” (https://identifiers.org/hmdb/HMDB0000191) and L-Aspartic acid” (https://identifiers.org/hmdb/HMDB0000191)
• http://classic.wikipathways.org/instance/WP1356_r116884 http://rdf.wikipathways.org/Pathway/WP1356_r116884/WP/Interaction/caa30 “Pyruvic acid” (https://identifiers.org/hmdb/HMDB0000243) and Pyruvic acid” (https://identifiers.org/hmdb/HMDB0000243)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations