wikipathways-collection

WikiPathways WP1352

• WikiPathways: WP1352 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 28
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: .. all OK!
  • numericHGNCIDs: .. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 16 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 28

• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/cd250 (3-L-Hydroxyacyl-CoA)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/e85ab (3-ketoacyl-CoA)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/bd8 (ACSL4)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/ea9c5 (Acetoacetyl-ACP)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/ec40a (Acetyl-ACP)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/bfc (Acetyl-CoA)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/d3d5e (Acetyl-synthase)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/fd1 (Acyl-CoA (n+2))
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/e222f (Butyryl-ACP)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/e98c0 (Crotonoyl-ACP)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/ab2 (FASN)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/b16 (FASN)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/c2a (FASN)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/ce0 (FASN)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/d1e (FASN)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/da7 (FASN)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/e08 (FASN)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/f06 (FASN)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/db3d5 (Fatty acyl CoA)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/a71f5 (Long-Chain fatty acid)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/dc97e (Malonyl-ACP)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/ae0 (Malonyl-CoA)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/e7574 (Oxaloacetate)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/d4883 (Palmitate)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/b1233 (Palmitoyl-ACP)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/aae77 (Pyruvate)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/f851e (beta-hydroxybutyryl)
• http://classic.wikipathways.org/instance/WP1352_r140552 http://rdf.wikipathways.org/Pathway/WP1352_r140552/DataNode/cb2e1 (trans-delta2-enoyl-CoA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2

http://classic.wikipathways.org/instance/WP1352_r140552 LOC793576 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1352_r140552 wu:fa04h02 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping