wikipathways-collection

WikiPathways WP1346

• WikiPathways: WP1346 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 10
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: .. all OK!
  • numericHGNCIDs: .. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 16 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 10

• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/a58 (BAX)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/fe0 (CLTC)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/b00 (Gene Symbol)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/b66 (IL2RG)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/c9e (IRS2)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/b2b (MCL1)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/aed (MUC1)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/bcc (SOS1)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/b62 (STAT5A)
• http://classic.wikipathways.org/instance/WP1346_r116888 http://rdf.wikipathways.org/Pathway/WP1346_r116888/DataNode/fd7 (STAT5B)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2

http://classic.wikipathways.org/instance/WP1346_r116888 LOC792354 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1346_r116888 LOC563639 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping