wikipathways-collection

WikiPathways WP1339

• WikiPathways: WP1339 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .x we found 1 problem(s):
    • Metabolite can use H₂O instead of H2O: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP1339_r136935 http://rdf.wikipathways.org/Pathway/WP1339_r136935/DataNode/b2b (ATP8)
• http://classic.wikipathways.org/instance/WP1339_r136935 http://rdf.wikipathways.org/Pathway/WP1339_r136935/DataNode/bd7 (COX7A3)
• http://classic.wikipathways.org/instance/WP1339_r136935 http://rdf.wikipathways.org/Pathway/WP1339_r136935/DataNode/f02 (COX7C)
• http://classic.wikipathways.org/instance/WP1339_r136935 http://rdf.wikipathways.org/Pathway/WP1339_r136935/DataNode/bea (SLC25A6)
• http://classic.wikipathways.org/instance/WP1339_r136935 http://rdf.wikipathways.org/Pathway/WP1339_r136935/DataNode/fe1 (UCP1)
• http://classic.wikipathways.org/instance/WP1339_r136935 http://rdf.wikipathways.org/Pathway/WP1339_r136935/DataNode/c2d (UCP3)
• http://classic.wikipathways.org/instance/WP1339_r136935 http://rdf.wikipathways.org/Pathway/WP1339_r136935/DataNode/ad3 (UQCR)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Water chemical formula can use Unicode

Metabolite can use H₂O instead of H2O: 1

* [http://classic.wikipathways.org/instance/WP1339_r136935](http://classic.wikipathways.org/instance/WP1339_r136935)

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/water