wikipathways-collection

WikiPathways WP1337

• WikiPathways: WP1337 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 22
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 10 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .. all OK!
  • calcium: .x we found 1 problem(s):
    • Metabolite can use Ca²⁺ instead of Ca2+: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 125
• Number of assertions: 251
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 22

• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/ae2 (CD14)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/a774a (DUSP9)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/f6f08 (FGF1)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/cd915 (FGF9)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/c76 (IL1A)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/c5e (KRAS)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/bf0 (MAP2K3)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/fb2 (MAP4K1)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/e3a (MAP4K4)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/cb416 (NTF4)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/eec (PAK1)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/ed063 (PLA2G4F)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/b16 (PPP3CA)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/ec3 (PPP3CB)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/ccc (PPP3R2)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/c908a (PPP5D1)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/a79 (PTPN7)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/a3535 (Phosphatidylinositol signaling system)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/bad (RASGRP1)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/a51 (RPS6KA3)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/cde (STK4)
• http://classic.wikipathways.org/instance/WP1337_r116770 http://rdf.wikipathways.org/Pathway/WP1337_r116770/DataNode/ee3e9 (p53 signaling pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Calcium chemical formula can use Unicode

Metabolite can use Ca²⁺ instead of Ca2+: 1

• http://classic.wikipathways.org/instance/WP1337_r116770

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/calcium