wikipathways-collection

WikiPathways WP1329

• WikiPathways: WP1329 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 15
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: .. all OK!
  • numericHGNCIDs: .. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 8
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 16 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 15

• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/b1d (CASP3)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/b7d (CLCA2)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/ac5 (DSP)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/af4 (IRS2)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/c89 (LAMA3)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/fdb (LAMB3)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/b52 (LAMC2)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/e72 (LAMR1)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/c36 (MMP7)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/afe (MST1R)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/d34 (PLEC1)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/efa (SFN)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/e6d (YWHAB)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/fd1 (YWHAQ)
• http://classic.wikipathways.org/instance/WP1329_r140550 http://rdf.wikipathways.org/Pathway/WP1329_r140550/DataNode/f69 (YWHAZ)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 8

http://classic.wikipathways.org/instance/WP1329_r140550 LOC563639 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1329_r140550 LOC792354 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1329_r140550 LOC100149498 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1329_r140550 zgc:153713 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1329_r140550 LAMA2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1329_r140550 DST with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1329_r140550 LOC561356 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1329_r140550 MET with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping