wikipathways-collection

WikiPathways WP1323

• WikiPathways: WP1323 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 36
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: .. all OK!
  • numericHGNCIDs: .. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 11
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 16 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 36

• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/b83 (APPL)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/bbc (APPL)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/e52 (APPL)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/a41 (ARF4)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/bf1 (ARF4)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/c21 (ARF4)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/da2 (CBLC)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/afd (DOK2)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/d6f (EEF1A1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/f05 (EEF1A1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/d08 (GRB7)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/c84 (HIST3H3)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/ad3 (KLF11)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/a8c (KRT17)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/d71 (MAP2K3)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/aa6 (MAP3K14)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/b44 (MYC)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/cd2 (NCK1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/b36 (NDUFA13)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/b73 (PLD1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/def (PLD1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/ed6 (PLEC1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/f74 (PLSCR1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/b19 (PTK6)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/ce5 (REPS2)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/ebe (SH3KBP1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/b85 (SIN3A)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/b9c (SNCA)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/d6d (SOCS3)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/d47 (SOS1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/e75 (STAT5A)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/f51 (STAT5A)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/f57 (STAT5B)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/f67 (VAV1)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/f3e (VAV2)
• http://classic.wikipathways.org/instance/WP1323_r140551 http://rdf.wikipathways.org/Pathway/WP1323_r140551/DataNode/bb2 (YWHAB)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 11

http://classic.wikipathways.org/instance/WP1323_r140551 LOC564899 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 LOC563639 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 LOC792354 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 LOC100149498 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 LOC100151336 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 CH211-125M10.3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 LOC100149671 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 LOC100007590 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 LOC100008005 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 DDEF1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1323_r140551 LOC562134 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping