wikipathways-collection

WikiPathways WP1322

• WikiPathways: WP1322 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 13
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: .. all OK!
  • numericHGNCIDs: .. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 5
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 16 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 13

• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/b2f (BMX)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/d03 (CASP3)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/ed0 (CD40)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/a84 (ERBB3)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/ec8 (FES)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/b2c (IL6)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/da9 (IL6)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/e81 (SOCS3)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/f3f (SOS1)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/d52 (STAT5A)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/c4f (STAT5B)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/e94 (TYK2)
• http://classic.wikipathways.org/instance/WP1322_r116887 http://rdf.wikipathways.org/Pathway/WP1322_r116887/DataNode/db3 (VAV1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 5

http://classic.wikipathways.org/instance/WP1322_r116887 LOC569951 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1322_r116887 crebbpb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1322_r116887 LOC563639 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1322_r116887 LOC792354 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1322_r116887 LOC792089 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping