wikipathways-collection

WikiPathways WP1238

• WikiPathways: WP1238 (classic)
• Species: Anopheles gambiae

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 8
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

• http://classic.wikipathways.org/instance/WP1238_r136956 http://rdf.wikipathways.org/Pathway/WP1238_r136956/DataNode/f29 (POLR1A)
• http://classic.wikipathways.org/instance/WP1238_r136956 http://rdf.wikipathways.org/Pathway/WP1238_r136956/DataNode/f75 (POLR1D)
• http://classic.wikipathways.org/instance/WP1238_r136956 http://rdf.wikipathways.org/Pathway/WP1238_r136956/DataNode/b1b (POLR2K)
• http://classic.wikipathways.org/instance/WP1238_r136956 http://rdf.wikipathways.org/Pathway/WP1238_r136956/DataNode/bb9 (POLR3K)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 8

http://classic.wikipathways.org/instance/WP1238_r136956 AgaP_AGAP010493 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1238_r136956 AgaP_AGAP012169 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1238_r136956 AgaP_AGAP009539 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1238_r136956 AgaP_AGAP007810 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1238_r136956 AgaP_AGAP004254 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1238_r136956 AgaP_AGAP008151 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1238_r136956 AgaP_AGAP008393 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1238_r136956 AgaP_AGAP008522 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping