wikipathways-collection

WikiPathways WP112

• WikiPathways: WP112
• Scholia: WP112

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 4 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 13
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 2

Fails

InteractionTests.possibleTranslocations

Interactions between identical nodes: 13

http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id1579fe03_1 "Oxaloacetate" (https://identifiers.org/cas/328-42-7) and 
Oxaloacetate" (https://identifiers.org/hmdb/HMDB0000223)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/idbc0a397a "Acetaldehyde" (https://identifiers.org/cas/75-07-0) and 
Acetaldehyde" (https://identifiers.org/cas/75-07-0)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id9b188845 "Malate" (https://identifiers.org/cas/6915-15-7) and 
Malate" (https://identifiers.org/cas/6915-15-7)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id2779c59b "Malate" (https://identifiers.org/cas/6915-15-7) and 
Malate" (https://identifiers.org/cas/6915-15-7)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id15d629_1 "Ethanol" (https://identifiers.org/cas/64-17-5) and 
Ethanol" (https://identifiers.org/cas/64-17-5)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/idb866de7e_1 "Pyruvate" (https://identifiers.org/cas/127-17-3) and 
Pyruvate" (https://identifiers.org/hmdb/HMDB0000243)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id1579fe03_2 "Oxaloacetate" (https://identifiers.org/hmdb/HMDB0000223) and 
Oxaloacetate" (https://identifiers.org/cas/328-42-7)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id2a45297_1 "Acetyl-CoA" (https://identifiers.org/cas/72-89-9) and 
Acetyl-CoA" (https://identifiers.org/cas/72-89-9)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id280fd200_1 "Acetate" (https://identifiers.org/cas/64-19-7) and 
Acetate" (https://identifiers.org/cas/64-19-7)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id15d629_2 "Ethanol" (https://identifiers.org/cas/64-17-5) and 
Ethanol" (https://identifiers.org/cas/64-17-5)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/idb866de7e_2 "Pyruvate" (https://identifiers.org/hmdb/HMDB0000243) and 
Pyruvate" (https://identifiers.org/cas/127-17-3)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id2a45297_2 "Acetyl-CoA" (https://identifiers.org/cas/72-89-9) and 
Acetyl-CoA" (https://identifiers.org/cas/72-89-9)
http://www.wikipathways.org/instance/WP112_rr117329 http://rdf.wikipathways.org/Pathway/WP112_rr117329/WP/Interaction/id280fd200_2 "Acetate" (https://identifiers.org/cas/64-19-7) and 
Acetate" (https://identifiers.org/cas/64-19-7)

More details at https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations

ReferencesTests.atLeastOneReference

Found 1 pathways with zero (PubMed) references

http://www.wikipathways.org/instance/WP112_rr117329 'Principal pathways of carbon metabolism' in Saccharomyces cerevisiae has zero references; 

More details at https://wikipathways.github.io/WikiPathwaysCurator/ReferencesTests/atLeastOneReference