wikipathways-collection

WikiPathways WP1075

• WikiPathways: WP1075 (classic)
• Species: Bos taurus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 19
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .x we found 1 problem(s):
    • Unexpected metabolite to non-metabolite conversions:4
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 19

http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/d1eb6 ((11R)-hydroxymethylene-THF)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/b4e68 ((11S)-hydroxymethylene-THF)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/bfe70 (D-dimer)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/e43dd (D-dimer)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/dd56f (FOLR3)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/d1353 (FOLR4)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/b5d1d (Fibrin)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/ea6aa (Fibrin)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/a741c (Fibrinogen)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/c7ee6 (Fibrinogen)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/cc013 (GPX 1)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/b7344 (HbA1c)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/fd377 (HbA1c)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/c2c56 (INS)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/fae15 (INS)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/aec15 (NOS)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/c1059 (SAA1)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/c5808 (SAA2)
http://classic.wikipathways.org/instance/WP1075_r120905 http://rdf.wikipathways.org/Pathway/WP1075_r120905/DataNode/de80e (SAA3)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

No metabolite to non-metabolite conversions

Unexpected metabolite to non-metabolite conversions:4

• Bos taurus http://classic.wikipathways.org/instance/WP1075_r120905 → https://identifiers.org/chebi/CHEBI:37445 https://identifiers.org/ensembl/ENSBTAG00000013907 http://rdf.wikipathways.org/Pathway/WP1075_r120905/WP/Interaction/bc3ed
  
• Bos taurus http://classic.wikipathways.org/instance/WP1075_r120905 → https://identifiers.org/hmdb/HMDB0001491 https://identifiers.org/ensembl/ENSBTAG00000013907 http://rdf.wikipathways.org/Pathway/WP1075_r120905/WP/Interaction/c3e34
  
• Bos taurus http://classic.wikipathways.org/instance/WP1075_r120905 → https://identifiers.org/chebi/CHEBI:37445 https://identifiers.org/ensembl/ENSBTAG00000037811 http://rdf.wikipathways.org/Pathway/WP1075_r120905/WP/Interaction/d8574
  
• Bos taurus http://classic.wikipathways.org/instance/WP1075_r120905 → https://identifiers.org/chebi/CHEBI:37445 https://identifiers.org/ensembl/ENSBTAG00000001069 http://rdf.wikipathways.org/Pathway/WP1075_r120905/WP/Interaction/f457b
  

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/noMetaboliteToNonMetaboliteConversions