sr24-curation

WikiPathways WP702

• WikiPathways: WP702 (classic)
• Species: Homo sapiens
• Scholia: WP702

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 11
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 16 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 2 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 24
• Number of tests: 149
• Number of assertions: 299
• Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 11

• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/fa9a6
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/d0731
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/c826a
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/e36ff
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/b9d98
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/f8ad5
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/c66be
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/fb077
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/bb15d
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/e444b
• http://classic.wikipathways.org/instance/WP702_r137565 -> http://rdf.wikipathways.org/Pathway/WP702_r137565/ComplexBinding/f4986

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2

http://classic.wikipathways.org/instance/WP702_r137565 CYP450 with datasource Pfam
http://classic.wikipathways.org/instance/WP702_r137565 Glutathione transferase with datasource Pfam

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping