sr24-curation

WikiPathways WP5506

• WikiPathways: WP5506 (classic)
• Species: Homo sapiens
• Scholia: WP5506

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 9
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 10
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 16 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .. all OK!
  • allEmptyDescriptions: .. all OK!
  • allShortDescriptions: .x we found 1 problem(s):
    • Pathways of with a very short description: 1
  • multipleDescriptions: .. all OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 2 tests OK!
• WikidataTests
  • keggWithoutMapping: .. all OK!
  • pubchemCIDWithoutMapping: .. all OK!
  • hmdbWithoutMapping: .. all OK!
  • casWithoutMapping: .. all OK!
  • wikDataTypo: .. all OK!
  • duplicateWikidataMappings: .. all OK!
  • wikidataIdentifiersWrong: .. all OK!
  • chemspiderCIDWithoutMapping: .. all OK!
  • lipidMapsWithoutMapping: .. all OK!
  • kNApSAcKWithoutMapping: .. all OK!
  • replaceWikipedia: .. all OK!
  • chebiWithoutMapping_Reactome: .. all OK!
  • chebiWithoutMapping: .. all OK!
  • inchikeyWithoutMapping: .x we found 1 problem(s):
    • InChIKey identifiers without Wikidata mappings: 1
  • retiredIdentifiers: .. all OK!

Summary

• Number of test classes: 24
• Number of tests: 149
• Number of assertions: 299
• Number of fails: 5

Fails

Interactions without references

Interactions without literature references: 9

• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/e4a6c
• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/idc3f9ca71
• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/idcb736366
• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/idb83ec8f6
• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/idbf91fee3
• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/idf02016cf
• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/ebf19
• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/idfd836518
• http://classic.wikipathways.org/instance/WP5506_r136359 -> http://rdf.wikipathways.org/Pathway/WP5506_r136359/WP/Interaction/idfe78d24b

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Interactions with Labels

Interactions found that involve Labels: 3

• http://classic.wikipathways.org/instance/WP5506_r136359 “NAD synthetase 1 deficiency” with graphId d7a82
• http://classic.wikipathways.org/instance/WP5506_r136359 “NAD(P)HX epimerase deficiency” with graphId cf0ea
• http://classic.wikipathways.org/instance/WP5506_r136359 “NAD(P)HX dehydratase deficiency” with graphId f7ea7

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Interactions with unconnected points

Interactions with unconnected points: 10

• http://classic.wikipathways.org/instance/WP5506_r136359

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Pathway description is too short

Pathways of with a very short description: 1

• http://classic.wikipathways.org/instance/WP5506_r136359

More details at https://www.wikipathways.org/WikiPathwaysCurator/PathwayTests/allShortDescriptions

InChIKey without a match in Wikidata

InChIKey identifiers without Wikidata mappings: 1

XHATZBPBVXWMQQ-MTKBYBFRSA-N	cyclo-NADHX