sr24-curation

WikiPathways WP5505

• WikiPathways: WP5505 (classic)
• Species: Homo sapiens
• Scholia: WP5505

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 1
  • missingHGNC: .. all OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 14
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 16 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .. all OK!
  • allEmptyDescriptions: .. all OK!
  • allShortDescriptions: .x we found 1 problem(s):
    • Pathways of with a very short description: 1
  • multipleDescriptions: .. all OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 2 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 24
• Number of tests: 149
• Number of assertions: 299
• Number of fails: 4

Fails

Interactions without references

Interactions without literature references: 1

• http://classic.wikipathways.org/instance/WP5505_r136116 -> http://rdf.wikipathways.org/Pathway/WP5505_r136116/WP/Interaction/id1ae6ae5

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Data nodes without an identifier

The following DataNodes have no identifier: 14

• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/a1b69 (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/a8f63 (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/ac181 (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/b51ef (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/b815a (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/bff3d (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/c06ca (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/c79db (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/cf213 (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/e7527 (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/e9c81 (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/f1f98 (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/ffdc1 (Metabolite)
• http://classic.wikipathways.org/instance/WP5505_r136116 http://rdf.wikipathways.org/Pathway/WP5505_r136116/DataNode/f758a (flippase)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with unconnected points

Interactions with unconnected points: 1

• http://classic.wikipathways.org/instance/WP5505_r136116

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Pathway description is too short

Pathways of with a very short description: 1

• http://classic.wikipathways.org/instance/WP5505_r136116

More details at https://www.wikipathways.org/WikiPathwaysCurator/PathwayTests/allShortDescriptions