sr24-curation

WikiPathways WP4917

WikiPathways: WP4917 (classic)
Species: Homo sapiens
Scholia: WP4917
Tests
CASMetabolitesTests: all 2 tests OK!
ChEBIMetabolitesTests: all 5 tests OK!
ChemSpiderTests: all 2 tests OK!
CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
  - Interactions without literature references: 92
- missingHGNC: .. all OK!
DataNodesTests: all 5 tests OK!
EnsemblTests: all 5 tests OK!
GeneTests: all 5 tests OK!
GeneralTests: all 15 tests OK!
HMDBMetabolitesTests: all 2 tests OK!
HMDBSecMetabolitesTests: all 3 tests OK!
IEMPathwayTests
- allMetabolitesInteract: .x we found 1 problem(s):
  - Found metabolites without interaction: 2
- metabolicConversions: .. all OK!
- catalystsWithCommonDataSource: .. all OK!
- metabolicConversionIdentifiersCommon: .. all OK!
- diseasesHaveIdentifiers: .. all OK!
- omimIdentifiers: .. all OK!
InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .. all OK!
- UnconnectedPoints: .x we found 1 problem(s):
  - Interactions with unconnected points: 4
- possibleTranslocations: .x we found 1 problem(s):
  - Interactions between identical nodes: 87
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
KEGGMetaboliteTests: all 2 tests OK!
LIPIDMAPSTests: all 1 tests OK!
MetaboliteStructureTests: all 1 tests OK!
MetabolitesTests
- metaboliteAlsoOtherType: .. all OK!
- casNumbersNotMarkedAsMetabolite: .. all OK!
- chemspiderIDsNotMarkedAsMetabolite: .. all OK!
- HMDBIDsNotMarkedAsMetabolite: .. all OK!
- KEGGIDsNotMarkedAsMetabolite: .. all OK!
- metabolitesWithAnEnsembleID: .. all OK!
- metabolitesWithAnEntrezGeneID: .. all OK!
- metabolitesWithDbButNoIdentifier: .. all OK!
- metabolitesWithIdentifierButNoDb: .. all OK!
- ChEBIIDsNotMarkedAsMetabolite: .. all OK!
- PubChemIDsNotMarkedAsMetabolite: .. all OK!
- PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
- PubChemIDsNotNumbers: .. all OK!
- PubChemSubstanceIDsNotNumbers: .. all OK!
- tooManyInChIKeys: .. all OK!
- achiralAminoAcids: .x we found 1 problem(s):
  - Metabolites with ChEBI identifiers of achiral amino acids: 2
OudatedDataSourcesTests: all 24 tests OK!
PathwayTests: all 11 tests OK!
ProteinsTests: all 2 tests OK!
PubChemMetabolitesTests: all 3 tests OK!
ReferencesTests: all 6 tests OK!
UniProtTests: all 5 tests OK!
UnicodeTests: all 2 tests OK!
WikidataTests
- keggWithoutMapping: .. all OK!
- pubchemCIDWithoutMapping: .. all OK!
- hmdbWithoutMapping: .. all OK!
- casWithoutMapping: .. all OK!
- wikDataTypo: .. all OK!
- duplicateWikidataMappings: .. all OK!
- wikidataIdentifiersWrong: .. all OK!
- chemspiderCIDWithoutMapping: .. all OK!
- lipidMapsWithoutMapping: .. all OK!
- kNApSAcKWithoutMapping: .. all OK!
- replaceWikipedia: .. all OK!
- chebiWithoutMapping_Reactome: .. all OK!
- chebiWithoutMapping: .x we found 1 problem(s):
  - ChEBI identifiers without Wikidata mappings: 3
- inchikeyWithoutMapping: .. all OK!
- retiredIdentifiers: .. all OK!

Summary

Number of test classes: 24
Number of tests: 149
Number of assertions: 299
Number of fails: 6

Fails

Interactions without references

Interactions without literature references: 92

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

All metabolites are involved in interactions

Found metabolites without interaction: 2

https://identifiers.org/wikipathways/WP4917 has an metabolite not linked to an interaction: Gly
https://identifiers.org/wikipathways/WP4917 has an metabolite not linked to an interaction: Ala

More details at https://www.wikipathways.org/WikiPathwaysCurator/IEMPathwayTests/allMetabolitesInteract

Interactions with unconnected points

Interactions with unconnected points: 4

http://classic.wikipathways.org/instance/WP4917_r139650

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Possible MIM translocation

Interactions between identical nodes: 87

http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/e9229 “organic cation” (https://identifiers.org/chebi/CHEBI:25697) and organic cation” (https://identifiers.org/chebi/CHEBI:25697)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/af6cd “α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810) and α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/b3c71 “organic anion” (https://identifiers.org/chebi/CHEBI:25696) and organic anion” (https://identifiers.org/chebi/CHEBI:25696)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/efa06 “organic anion” (https://identifiers.org/chebi/CHEBI:25696) and organic anion” (https://identifiers.org/chebi/CHEBI:25696)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/c6794 “α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810) and α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d6d0a “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/daacd_2 “CO₂” (https://identifiers.org/chebi/CHEBI:16526) and CO₂” (https://identifiers.org/chebi/CHEBI:16526)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/f28a0 “organic cation” (https://identifiers.org/chebi/CHEBI:25697) and organic cation” (https://identifiers.org/chebi/CHEBI:25697)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/a3976 “sulfate” (https://identifiers.org/chebi/CHEBI:16189) and sulfate” (https://identifiers.org/chebi/CHEBI:16189)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/aa620 “Cl-“ (https://identifiers.org/chebi/CHEBI:17996) and Cl-“ (https://identifiers.org/chebi/CHEBI:17996)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/cf8b0 “Pro” (https://identifiers.org/chebi/CHEBI:26271) and Pro” (https://identifiers.org/chebi/CHEBI:26271)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/eb27c “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ed301 “Cl-“ (https://identifiers.org/chebi/CHEBI:17996) and Cl-“ (https://identifiers.org/chebi/CHEBI:17996)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/bb7cb “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/a19e2 “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/fb4a8_1 “Amino acids” (https://identifiers.org/chebi/CHEBI:33709) and Amino acids” (https://identifiers.org/chebi/CHEBI:33709)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/e30eb “organic anion” (https://identifiers.org/chebi/CHEBI:25696) and organic anion” (https://identifiers.org/chebi/CHEBI:25696)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d0b29 “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/b4e4d “organic anion” (https://identifiers.org/chebi/CHEBI:25696) and organic anion” (https://identifiers.org/chebi/CHEBI:25696)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ab19e “organic anion” (https://identifiers.org/chebi/CHEBI:25696) and organic anion” (https://identifiers.org/chebi/CHEBI:25696)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/b68a9 “organic cation” (https://identifiers.org/chebi/CHEBI:25697) and organic cation” (https://identifiers.org/chebi/CHEBI:25697)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/de112 “Glucose” (https://identifiers.org/chebi/CHEBI:17234) and Glucose” (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/a4f49 “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/fca60 “HCO3-“ (https://identifiers.org/chebi/CHEBI:17544) and HCO3-“ (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/fca60 “HCO3-“ (https://identifiers.org/chebi/CHEBI:17544) and hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/fca60 “hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544) and HCO3-“ (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/fca60 “hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544) and hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d8627 “Glucose” (https://identifiers.org/chebi/CHEBI:17234) and Glucose” (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d37f4 “organic anion” (https://identifiers.org/chebi/CHEBI:25696) and organic anion” (https://identifiers.org/chebi/CHEBI:25696)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/dc40b “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/fe8dc “H+” (https://identifiers.org/chebi/CHEBI:15378) and H+” (https://identifiers.org/chebi/CHEBI:15378)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d561f “Glucose” (https://identifiers.org/chebi/CHEBI:17234) and Glucose” (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/b4a3b “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ddcc2 “K+” (https://identifiers.org/chebi/CHEBI:29103) and K+” (https://identifiers.org/chebi/CHEBI:29103)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/f1732 “HPO4 2-“ (https://identifiers.org/chebi/CHEBI:43474) and HPO4 2-“ (https://identifiers.org/chebi/CHEBI:43474)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/efbd6 “organic cation” (https://identifiers.org/chebi/CHEBI:25697) and organic cation” (https://identifiers.org/chebi/CHEBI:25697)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ea90d “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/e6a22 “Glucose” (https://identifiers.org/chebi/CHEBI:17234) and Glucose” (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/a1e1e_1 “H₂O” (https://identifiers.org/chebi/CHEBI:15377) and H₂O” (https://identifiers.org/chebi/CHEBI:15377)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ef90c “H+” (https://identifiers.org/chebi/CHEBI:15378) and H+” (https://identifiers.org/chebi/CHEBI:15378)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/bf9d0 “Lactate” (https://identifiers.org/chebi/CHEBI:24996) and Lactate” (https://identifiers.org/chebi/CHEBI:24996)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d0e96 “H+” (https://identifiers.org/chebi/CHEBI:15378) and H+” (https://identifiers.org/chebi/CHEBI:15378)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ced15 “HCO3-“ (https://identifiers.org/chebi/CHEBI:17544) and HCO3-“ (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ced15 “HCO3-“ (https://identifiers.org/chebi/CHEBI:17544) and hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ced15 “hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544) and HCO3-“ (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ced15 “hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544) and hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ac99f “Amino acids” (https://identifiers.org/chebi/CHEBI:33709) and Amino acids” (https://identifiers.org/chebi/CHEBI:33709)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ac6e3 “formate” (https://identifiers.org/chebi/CHEBI:15740) and formate” (https://identifiers.org/chebi/CHEBI:15740)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d796d_1 “CO₂” (https://identifiers.org/chebi/CHEBI:16526) and CO₂” (https://identifiers.org/chebi/CHEBI:16526)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/c4c7a “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/a6856 “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/b22fb “H+” (https://identifiers.org/chebi/CHEBI:15378) and H+” (https://identifiers.org/chebi/CHEBI:15378)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ae5f9 “K+” (https://identifiers.org/chebi/CHEBI:29103) and K+” (https://identifiers.org/chebi/CHEBI:29103)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/cd7b5 “K+” (https://identifiers.org/chebi/CHEBI:29103) and K+” (https://identifiers.org/chebi/CHEBI:29103)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d355d_1 “H₂O” (https://identifiers.org/chebi/CHEBI:15377) and H₂O” (https://identifiers.org/chebi/CHEBI:15377)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/ab57a “H+” (https://identifiers.org/chebi/CHEBI:15378) and H+” (https://identifiers.org/chebi/CHEBI:15378)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/cbf54 “HPO4 2-“ (https://identifiers.org/chebi/CHEBI:43474) and HPO4 2-“ (https://identifiers.org/chebi/CHEBI:43474)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/f9f6f “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/c3801 “Amino acids” (https://identifiers.org/chebi/CHEBI:33709) and Amino acids” (https://identifiers.org/chebi/CHEBI:33709)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/fb4a8_2 “Amino acids” (https://identifiers.org/chebi/CHEBI:33709) and Amino acids” (https://identifiers.org/chebi/CHEBI:33709)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/e6b23 “H2PO4-“ (https://identifiers.org/chebi/CHEBI:39745) and H2PO4-“ (https://identifiers.org/chebi/CHEBI:39745)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/e6b23 “H2PO4-“ (https://identifiers.org/chebi/CHEBI:39745) and H2PO4 -“ (https://identifiers.org/chebi/CHEBI:39745)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/e6b23 “H2PO4 -“ (https://identifiers.org/chebi/CHEBI:39745) and H2PO4-“ (https://identifiers.org/chebi/CHEBI:39745)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/e6b23 “H2PO4 -“ (https://identifiers.org/chebi/CHEBI:39745) and H2PO4 -“ (https://identifiers.org/chebi/CHEBI:39745)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/acdbc “α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810) and α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d15fa “HCO3-“ (https://identifiers.org/chebi/CHEBI:17544) and HCO3-“ (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d15fa “HCO3-“ (https://identifiers.org/chebi/CHEBI:17544) and hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d15fa “hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544) and HCO3-“ (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d15fa “hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544) and hydrogencarbonate” (https://identifiers.org/chebi/CHEBI:17544)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/b461b “I-“ (https://identifiers.org/chebi/CHEBI:16382) and I-“ (https://identifiers.org/chebi/CHEBI:16382)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/a1e1e_2 “H₂O” (https://identifiers.org/chebi/CHEBI:15377) and H₂O” (https://identifiers.org/chebi/CHEBI:15377)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d53d0 “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/eabc0 “α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810) and α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/fc5f9 “α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810) and α-ketoglutarate” (https://identifiers.org/chebi/CHEBI:16810)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d00cd “Cl-“ (https://identifiers.org/chebi/CHEBI:17996) and Cl-“ (https://identifiers.org/chebi/CHEBI:17996)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d796d_2 “CO₂” (https://identifiers.org/chebi/CHEBI:16526) and CO₂” (https://identifiers.org/chebi/CHEBI:16526)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/cd77d “Cys” (https://identifiers.org/chebi/CHEBI:17376) and Cys” (https://identifiers.org/chebi/CHEBI:17376)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/eccb0 “H+” (https://identifiers.org/chebi/CHEBI:15378) and H+” (https://identifiers.org/chebi/CHEBI:15378)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/dd116 “Amino acids” (https://identifiers.org/chebi/CHEBI:33709) and Amino acids” (https://identifiers.org/chebi/CHEBI:33709)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/d355d_2 “H₂O” (https://identifiers.org/chebi/CHEBI:15377) and H₂O” (https://identifiers.org/chebi/CHEBI:15377)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/f4159 “OH-“ (https://identifiers.org/chebi/CHEBI:16234) and OH-“ (https://identifiers.org/chebi/CHEBI:16234)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/a3748 “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/c553d “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/bd2ff “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/f2d37 “oxalate(2−)” (https://identifiers.org/chebi/CHEBI:30623) and oxalate(2−)” (https://identifiers.org/chebi/CHEBI:30623)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/daacd_1 “CO₂” (https://identifiers.org/chebi/CHEBI:16526) and CO₂” (https://identifiers.org/chebi/CHEBI:16526)
http://classic.wikipathways.org/instance/WP4917_r139650 http://rdf.wikipathways.org/Pathway/WP4917_r139650/WP/Interaction/c9a4e “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

Identifier used of a amino acid with undefined stereochemistry

Metabolites with ChEBI identifiers of achiral amino acids: 2

http://classic.wikipathways.org/instance/WP4917_r139650 Ala CHEBI:16449
http://classic.wikipathways.org/instance/WP4917_r139650 Pro CHEBI:26271

More details at https://www.wikipathways.org/WikiPathwaysCurator/MetabolitesTests/achiralAminoAcids

ChEBI identifier without a match in Wikidata

ChEBI identifiers without Wikidata mappings: 3

https://identifiers.org/chebi/CHEBI:46818 (urate) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4917_r139650
https://identifiers.org/chebi/CHEBI:58942 (Cationic amino acids) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4917_r139650
https://identifiers.org/chebi/CHEBI:64898 (Anionic amino acids) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4917_r139650

More details at https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping