sr24-curation

WikiPathways WP143

• WikiPathways: WP143 (classic)
• Species: Homo sapiens
• Scholia: WP143

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 46
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 1
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 16 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 2 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 24
• Number of tests: 149
• Number of assertions: 299
• Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 46

• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/e7011
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/b300c
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/b0967
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/a041a
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/e1025
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/d950c
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/ba0c8
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/de99d
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/d9e2a
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/c06ae
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/b696b
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/fadc3
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/a0271
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/c0e44
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/deded
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/faab3
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/a9b50
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/c14ff
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/db955
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/f32ff
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/a0b23
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/ae7ae
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/a09fc
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/c0ea1
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/b55a4
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/f3bc2
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/c8171
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/dd73e
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/d262e
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/f5f38
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/a0019
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/bee2c
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/b0ba2
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/a7585
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/f42d7
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/f885d
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/ed5c7
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/c1a7f
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/e570f
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/eb7c1
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/e3e31
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/f1d9d
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/dab47
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/dc722
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/d5434
• http://classic.wikipathways.org/instance/WP143_r137128 -> http://rdf.wikipathways.org/Pathway/WP143_r137128/WP/Interaction/ddbbb

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

All metabolites are involved in interactions

Found metabolites without interaction: 1

• https://identifiers.org/wikipathways/WP143 has an metabolite not linked to an interaction: (S)-3-Hydroxytetradecanoyl-CoA

More details at https://www.wikipathways.org/WikiPathwaysCurator/IEMPathwayTests/allMetabolitesInteract