UDP-derived sugars synthesis in fibroblasts (WP5394)

Homo sapiens

One of the main roles of fibroblasts is the secretion of the extracellular matrix components such as glycosaminoglycans (GAGs). This pathway describes the synthesis of GAGs precursors - five UDP-derived sugars (UDP-α-D-galactose, UDP-α-D-glucuronate, UDP-α-D-xylose, UDP-N-acetyl-α-D-galactosamine, UDP-N-α-alpha-D-glucosamine). It takes place in the cytosol, where it starts with the conversion of D-glucopyranose to D-glucopyranose 6-phosphate, after which it can either proceed via a shorter or a longer path. The shorter leads to the synthesis of UDP-α-D-galactose, UDP-α-D-glucuronate and UDP-α-D-xylose, while the longer leads to the synthesis of UDP-N-acetyl-α-D-galactosamine and UDP-N-acetyl-α-D-glucosamine. Some of the enzymes are missing in the pathway and can be a subject for future research. This pathway was created based on the pathway information from the MetaCyc database (see Bibliography).

Authors

Julia Błąd and Daniela Digles

Activity

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Organisms

Homo sapiens

Communities

Annotations

Cell Type Ontology

fibroblast

Pathway Ontology

nucleotide sugar metabolic pathway classic metabolic pathway

Participants

Label Type Compact URI Comment
UDP-α-D-glucose Metabolite chebi:58885
UDP-α-D-galactose Metabolite chebi:66914
β-D-fructofuranose 6-phosphate Metabolite chebi:57634
N-acetyl-α-D-galactosamine 1-phosphate Metabolite chebi:61970
α-D-galactosamine 1-phosphate Metabolite chebi:142399
D-galactosamine 6-phosphate Metabolite chebi:71674
D-glucosamine 6-phosphate Metabolite chebi:58725
UDP-N-acetyl-α-D-galactosamine Metabolite chebi:67138
UDP-N-acetyl-α-D-glucosamine Metabolite chebi:57705
N-acetyl-α-D-glucosamine 1-phosphate Metabolite chebi:57776
N-acetyl-α-D-glucosamine 6-phosphate Metabolite chebi:57513
α-D-glucosamine 1-phosphate Metabolite chebi:58516
α-D-glucose 6-phosphate Metabolite chebi:58225
D-glucopyranose 6-phosphate Metabolite chebi:4170
D-glucopyranose Metabolite chebi:4167
UDP-α-D-xylose Metabolite chebi:57632
UDP-α-D-glucuronate Metabolite chebi:58052
UGDH GeneProduct ensembl:ENSG00000109814
GALE GeneProduct ensembl:ENSG00000117308
GPI GeneProduct ensembl:ENSG00000105220
HK3 GeneProduct ensembl:ENSG00000160883
UXS1 GeneProduct ensembl:ENSG00000115652
GCK GeneProduct ensembl:ENSG00000106633
HK2 GeneProduct ensembl:ENSG00000159399
PGM3 GeneProduct ensembl:ENSG00000013375
PGM1 GeneProduct ensembl:ENSG00000079739
HK1 GeneProduct ensembl:ENSG00000156515
GFPT1 GeneProduct ensembl:ENSG00000198380
GALE GeneProduct ensembl:ENSG00000117308

References

  1. The MetaCyc database of metabolic pathways and enzymes - a 2019 update. Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D445–53. PubMed Europe PMC Scholia
  2. Novel Insight Into Glycosaminoglycan Biosynthesis Based on Gene Expression Profiles. Huang YF, Mizumoto S, Fujita M. Front Cell Dev Biol. 2021 Sep 6;9:709018. PubMed Europe PMC Scholia