Warburg effect modulated by deubiquitinating enzymes and their substrates (WP5216)

Homo sapiens

Even in the presence of oxygen, cancer cells convert glucose to lactate as their main source for energy production, instead of using the citric acid cycle and oxidative phosphorylation. This process is called the Warburg effect. This pathway shows the effects deubiquitinating enzymes (DUBs) and their substrates have. DUBs free proteins of their ubiquitin chain, so that the proteins can resume their function in the cells rather than be degraded by the ubiquitin-proteasome system (UPS). The deubiquitination of VHL via OTUD6B (part of a DUB subfamily) represses HIF-1α, whereas the direct deubiquitination of HIF-1a via DUBs leads to the increased expression of GLUT1 and VEGF. The transcription factor c-Myc helps regulate gene expression involved in the glucose metabolism (e.g., GLUT1, HK2, LDHA) and is stabilised by ubiquitin-specific proteases. The PI3K/Akt pathway is also upregulated by deubiquitination of VEGF and Akt. This entails cell growth and apoptosis regulation, as well as promoted glucose transport to cancer cells and activating mTor, which improves glycolysis. It is shown in this pathway, how deubiquitinating enzymes play an important role in stabilizing different proteins, acting as oncoproteins and tumor suppressors equally. This pathway is based on figure 3 featured in “Regulation of Cancer Metabolism by Deubiquitinating Enzymes: The Warburg Effect” by So-Hee Kim and Kwang-Hyun Baek.

Authors

Andra Waagmeester , Eric Weitz , Egon Willighagen , and Marlen m

Activity

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Organisms

Homo sapiens

Communities

CPTAC

Annotations

Pathway Ontology

glycolysis pathway

Disease Ontology

cancer

Participants

Label Type Compact URI Comment
F1,6BP Metabolite chebi:32966
GA3P Metabolite chebi:17138
1,3-BPG Metabolite chebi:89363
3PG Metabolite chebi:17050
Pyruvate Metabolite chebi:15361
Lactate Metabolite chebi:24996
Glucose Metabolite chebi:4167
Pyruvate Metabolite chebi:15361
PEP Metabolite chebi:18021
G6P Metabolite chebi:4170
Glucose Metabolite chebi:4167
F6P Metabolite chebi:61527
2PG Metabolite chebi:24344
SIRT7 GeneProduct ncbigene:51547
OTUB2 GeneProduct ncbigene:78990
FOXO1 GeneProduct ncbigene:2308
AKT1 GeneProduct ncbigene:207
HK2 GeneProduct ensembl:ENSG00000159399
USP7 GeneProduct ncbigene:7874
OTUB2 GeneProduct ncbigene:78990
OTUD6B GeneProduct ncbigene:51633
OTUB2 GeneProduct ncbigene:78990
c-Myc GeneProduct ensembl:ENSG00000136997
PGK1 GeneProduct ncbigene:5230
LDHA GeneProduct ncbigene:3939
GLUT1 GeneProduct ensembl:ENSG00000117394
USP28 GeneProduct ncbigene:57646
VHL GeneProduct ensembl:ENSG00000134086
FBP1 GeneProduct hgnc.symbol:FBP1
PI3K GeneProduct ensembl:ENSG00000121879
OTUB2 GeneProduct ncbigene:78990
PGAM1 GeneProduct ncbigene:5223
USP44 GeneProduct ncbigene:84101
OTUD7B GeneProduct ncbigene:56957
MTOR GeneProduct ncbigene:2475
HIF-1α GeneProduct ncbigene:3091
OTUB2 GeneProduct ncbigene:78990
OTUD6B GeneProduct ncbigene:51633
USP19 GeneProduct ncbigene:10869
HIF-1α GeneProduct ncbigene:3091
USP19 GeneProduct ncbigene:10869
G6PC GeneProduct ncbigene:2538
OTUB2 GeneProduct ncbigene:78990
USP7 GeneProduct ncbigene:7874
U2AF2 GeneProduct ncbigene:11338
USP19 GeneProduct ncbigene:10869
VEGF GeneProduct ensembl:ENSG00000112715
FOXO1 GeneProduct ncbigene:2308
USP7 GeneProduct ncbigene:7874
USP37 GeneProduct ncbigene:57695
USP37 GeneProduct ncbigene:57695
OTUB2 GeneProduct ncbigene:78990
OTUB2 GeneProduct ncbigene:78990
OTUD7B GeneProduct ncbigene:56957
OTUD6B GeneProduct ncbigene:51633
USP19 GeneProduct ncbigene:10869
HIF-1α GeneProduct ncbigene:3091
c-Myc GeneProduct ensembl:ENSG00000136997
USP28 GeneProduct ncbigene:57646
USP37 GeneProduct ncbigene:57695
OTUB2 GeneProduct ncbigene:78990
USP37 GeneProduct ncbigene:57695
OTUB2 GeneProduct ncbigene:78990
OTUD7B GeneProduct ncbigene:56957
OTUD6B GeneProduct ncbigene:51633
USP19 GeneProduct ncbigene:10869
PGK1 GeneProduct ncbigene:5230
VEGFR2 GeneProduct ensembl:ENSG00000128052

References

  1. Regulation of Cancer Metabolism by Deubiquitinating Enzymes: The Warburg Effect. Kim SH, Baek KH. IJMS [Internet]. 2021 Jun 8;22(12):6173. Available from: http://dx.doi.org/10.3390/IJMS22126173 DOI Scholia
  2. Phosphoenolpyruvate: An end to hand-waving. Behrman EJ, Gopalan V. Biochem Mol Biol Educ. 2008 Sep;36(5):323–4. PubMed Europe PMC Scholia
  3. VEGFA and tumour angiogenesis. Claesson-Welsh L, Welsh M. J Intern Med. 2013 Feb;273(2):114–27. PubMed Europe PMC Scholia
  4. PIK3CA in cancer: The past 30 years. Arafeh R, Samuels Y. Semin Cancer Biol. 2019 Dec;59:36–49. PubMed Europe PMC Scholia