Pentose phosphate pathway in senescent cells (WP5043)

Homo sapiens

The pentose phosphate pathway is an important route for glucose oxidation. This pathway is divided over 2 different branches; the non-oxidative and the oxidative. The oxidative branch supports the regeneration of reduced NADPH, while converting glucose-6-phosphate into ribulose-5-phosphate and CO2 in an unidirectional way. This branch is also linked to glycolysis at the glucose-6-phosphate level, while the non-oxidative branch is linked to glycolysis in a bidirectional way, depending on the availability of the intermediates glyceraldehyde-3-phosphate and fructose-6-phosphate. This non-oxidative branch converts pentose phosphates into phosphorylated ketones and aldoses (Almeida et al., 2018). During this process, ribose-5-phosphate is produced, which is an important precursor for nucleotide synthesis. The regeneration of the NADPH by the oxidative branch, is regulated by the NADP+/NADPH ratio. When this ratio is lower, due to lower levels of NADPH, the regeneration of NADPH is stimulated in order to maintain the balance (Clement et al., 2019). In case of senescence, OIS heightens this ratio, while proliferative exhaustion-induced senescence lowers this ratio. Furthermore, p53 lowers glycolysis by lowering the level of fructose-2,6-bisphosphate. The PPP is also upregulated due to oxidative stress and by conditions of low stress induced by P53, which is symptomatic of PE-induced senescence (Zhang et al., 2016). Another study by Wu et al. (2017) showed that one of the rate-limiting enzymes, 6-phosphogluconate dehydrogenase (6PGDH), is upregulated in OIS, due to which the PPP is also upregulated again. Metabolic hallmarks of cellular senescence: highlighting the role of intracellular pathways in various senescent phenotypes, by Birgit Veldman, was also used as a reference.

Authors

Rick Hendriks , Egon Willighagen , Eric Weitz , Friederike Ehrhart , Kristina Hanspers , Alex Pico , and Lars Willighagen

Activity

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Organisms

Homo sapiens

Communities

Annotations

Pathway Ontology

pentose phosphate pathway

Participants

Label Type Compact URI Comment
H+ Metabolite chebi:15378
H+ Metabolite chebi:15378
AMP Metabolite chebi:16027
NADPH Metabolite hmdb:HMDB00221
D-Fructose-6-Phosphate Metabolite wikidata:Q27096303
[CO2] Metabolite chebi:16526
D-Glucose-6-Phosphate Metabolite cas:59-56-3
D-Fructose-6-Phosphate Metabolite wikidata:Q27096303
D-sedoheptulose-7-phosphate Metabolite cas:2646-35-7
acetaldehyde Metabolite chebi:15343
NADPH Metabolite hmdb:HMDB00221
D-glucono-1,5-lactone-6-phosphate Metabolite cas:2641-81-8
D-Erythrose-4-phosphate Metabolite cas:585-18-2
NADP+ Metabolite chebi:18009
D-Ribose-5-phosphate Metabolite cas:3615-55-2
D-glyceraldehyde-3-phosphate Metabolite chebi:70817
D-glyceraldehyde-3-phosphate Metabolite wikidata:Q26992303
D-Xylulose-5-phosphate Metabolite chebi:16332
NADP+ Metabolite chebi:18009
D-ribose-1-phosphate Metabolite chebi:48462
6-Phospho-D-gluconate Metabolite chebi:48928
ATP Metabolite chebi:30616
NADP+ Metabolite chebi:18009
NADPH Metabolite hmdb:HMDB00221
Ribulose-phosphate 3-epimerase GeneProduct ensembl:ENSG00000197713
TP53 GeneProduct ensembl:ENSG00000141510
G6PD GeneProduct ensembl:ENSG00000160211
Deoxyribose-phophate aldolase GeneProduct ensembl:ENSG00000023697
Ribose phophate isomerase GeneProduct ensembl:ENSG00000153574
D-Ribulose-5-phosphate Protein uniprot:C9J9T0
Transaldolase Protein uniprot:A0A140VK56
Ribose-phosphate pyrophosphokinase Protein uniprot:A0A0B4J207
Transketolase Protein uniprot:A0A0B4J1R6
Transketolase Protein uniprot:A0A0B4J1R6
6-phosphogluconolactonase Protein uniprot:M0R0U3

References

  1. Glutathione Depletion, Pentose Phosphate Pathway Activation, and Hemolysis in Erythrocytes Protecting Cancer Cells from Vitamin C-induced Oxidative Stress. Zhang ZZ, Lee EE, Sudderth J, Yue Y, Zia A, Glass D, et al. J Biol Chem. 2016 Oct 28;291(44):22861–7. PubMed Europe PMC Scholia
  2. Metabolomics-Proteomics Combined Approach Identifies Differential Metabolism-Associated Molecular Events between Senescence and Apoptosis. Wu M, Ye H, Shao C, Zheng X, Li Q, Wang L, et al. J Proteome Res. 2017 Jun 2;16(6):2250–61. PubMed Europe PMC Scholia
  3. Improvement of neuronal differentiation by carbon monoxide: Role of pentose phosphate pathway. Almeida AS, Soares NL, Sequeira CO, Pereira SA, Sonnewald U, Vieira HLA. Redox Biol. 2018 Jul;17:338–47. PubMed Europe PMC Scholia
  4. The Plasma NAD+ Metabolome Is Dysregulated in “Normal” Aging. Clement J, Wong M, Poljak A, Sachdev P, Braidy N. Rejuvenation Res. 2019 Apr;22(2):121–30. PubMed Europe PMC Scholia