TCA cycle (Krebs cycle) (WP2624)

Arabidopsis thaliana

This pathway describes TCA cycle (Krebs Cycle) reactions in A. thaliana mitochondria.The metabolic links with the Glycolysis and Glutamate Biosynthesis are indicated. Protein identifiers for A. thaliana are from UNIPROT. The pathway is inspired from information drawn for Plant Physiology (Taiz and Zeiger) Third Edition and KEGG Pathways.

Authors

Anwesha Bohler , Sacha Bohler , Egon Willighagen , Martina Summer-Kutmon , and Eric Weitz

Activity

last edited

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Organisms

Arabidopsis thaliana

Communities

Annotations

Pathway Ontology

citric acid cycle pathway

Participants

Label Type Compact URI Comment
CoA Metabolite kegg.compound:C00010
Succinyl-CoA Metabolite hmdb:HMDB0001022
citrate Metabolite kegg.compound:C00158
FAD+ Metabolite hmdb:HMDB0001248
succinate Metabolite kegg.compound:C00042
Acetyl-CoA Metabolite hmdb:HMDB0001206
fumarate Metabolite kegg.compound:C00122
FADH2 Metabolite hmdb:HMDB0001197
2-oxoglutarate Metabolite kegg.compound:C00026
isocitrate Metabolite kegg.compound:C00311
oxaloacetate Metabolite kegg.compound:C00036
pyruvate Metabolite chebi:15361
CoA Metabolite kegg.compound:C00010
CO2 Metabolite hmdb:HMDB0001967
NAD+ Metabolite hmdb:HMDB0000902
NADH Metabolite hmdb:HMDB0001487
NAD+ Metabolite hmdb:HMDB0000902
NADH Metabolite hmdb:HMDB0001487
CoA Metabolite kegg.compound:C00010
CO2 Metabolite hmdb:HMDB0001967
NAD+ Metabolite hmdb:HMDB0000902
NADH Metabolite hmdb:HMDB0001487
CoA Metabolite kegg.compound:C00010
H2O Metabolite hmdb:HMDB0002111
ATP Metabolite hmdb:HMDB0000538
ADP Metabolite kegg.compound:C00008
malate Metabolite kegg.compound:C00149
H2O Metabolite hmdb:HMDB0002111
NAD+ Metabolite hmdb:HMDB0000902
NADH Metabolite hmdb:HMDB0001487
NAD+ Metabolite hmdb:HMDB0000902
NADH Metabolite hmdb:HMDB0001487
isocitrate Metabolite kegg.compound:C00311
2-oxoglutarate Metabolite kegg.compound:C00026
NADP+ Metabolite hmdb:HMDB0000902
NADPH Metabolite hmdb:HMDB0001487
CO2 Metabolite hmdb:HMDB0001967
CO2 Metabolite hmdb:HMDB0001967
CO2 Metabolite hmdb:HMDB0001967
isocitrate dehydrogenase 1 Protein uniprot:Q8LFC0
malic enzyme 2 Protein uniprot:Q8L7K9
malate dehydrogenase 2 Protein uniprot:Q9LKA3
pyruvate dehydrogenase alpha-1 Protein uniprot:P52901
succinyl-CoA synthetase alpha-1 Protein uniprot:P68209
fumarase Protein uniprot:P93033
2-oxoglutarate dehydrogenase Protein uniprot:Q9FLH2
citrate synthase 5 Protein uniprot:Q9M1D3
succinate dehydrogenase FeS 1 Protein uniprot:Q8LBZ7
aconitase 2 Protein uniprot:Q9SIB9
isocitrate dehydrogenase Protein uniprot:Q9SRZ6
malic enzyme 1 Protein uniprot:Q9SIU0
pyruvate dehydrogenase alpha-2 Protein uniprot:Q8H1Y0
pyruvate dehydrogenase beta-1 Protein uniprot:Q38799
malate dehydrogenase 1 Protein uniprot:Q9ZP06
citrate synthase 4 Protein uniprot:P20115
aconitase 1 Protein uniprot:Q42560
aconitase 3 Protein uniprot:Q94A28
isocitrate dehydrogenase 2 Protein uniprot:P93032
isocitrate dehydrogenase 3 Protein uniprot:O81796
isocitrate dehydrogenase 4 Protein uniprot:Q9LQK9
isocitrate dehydrogenase 5 Protein uniprot:Q945K7
isocitrate dehydrogenase 6 Protein uniprot:Q8LG77
2-oxoglutarate dehydrogenase Protein uniprot:F4IWV2
succinyl-CoA synthetase alpha-2 Protein uniprot:Q8LAD2
succinyl-CoA synthetase beta Protein uniprot:O82662
succinate dehydrogenase FeS 2 Protein uniprot:Q8LB02
succinate dehydrogenase FeS 3 Protein uniprot:Q9FJP9
succinate dehydrogenase 1 Protein uniprot:O82663
succinate dehydrogenase 2 Protein uniprot:Q9ZPX5

References